SASDBP7

Domain 3'X of hepatitis C virus RNA at low ionic strength

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Extrapolated to infinite dilution 最后更新:2023-03-02T16:54:16.648202+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Domain 3'X of hepatitis C virus RNA at low ionic strength

浓度0.37 – 1.5 缓冲液 / pH10mM Tris 0.1 mM EDTA / 7.0
实验温度27.0 设备 / 束线Advanced Photon Source (APS), Argonne National Laboratory / 12-ID-B SAXS/WAXS
波长0.0886 nm曝光1.0 s × 30

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Domain 3'X of hepatitis C virus
查看序列
GGUGGCUCCAUCUUAGCCCUAGUCACGGCUAGCUGUGAAAGGUCCGUGAGCCGCUUGACUGCAGAGAGUGCUGAUACUGGCCUCUCUGCAGAUCAAGU
RNAHepatitis C virus——–—monomer分子数 131.7 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1501[3]0.0–1.0 1/A含误差列缺失 00sasbdb/entries/p7/sasdbp7/source/SASDBP7.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)14.80.06Å
i0Guinier0.0920.0011—
i0P(r)0.092380.0—
mwExperimental36.8—kDa
rgGuinier3.7320.03Å
rgP(r)3.9560.0Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称10mM Tris 0.1 mM EDTA缓冲液浓度—
pH7.0添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2015-11-11储存 / 测量温度27.0 / 27.0
曝光时间1.0帧数30
波长0.0886样品-探测器距离2.0
光源X-ray synchrotron探测器Pilatus 2M
机构 / 束线Advanced Photon Source (APS), Argonne National Laboratory / 12-ID-B SAXS/WAXS · Lemont, IL, USA
q 范围0.0 – 10.0样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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full_entry_zipsasbdb/entries/p7/sasdbp7/source/SASDBP7.zipdownloaded148979386dfc643c9e5bd09d0c1101254dbe1cb818ffdfa8a3cff28f6ff25e52b5291下载查看原文件源站
pddfsasbdb/entries/p7/sasdbp7/source/SASDBP7.outdownloaded1705003e57f883aec2777f0c9df7d42cc7d00f6c58679efecf447bb3cc720fe12f701下载查看原文件源站
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curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(4 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:156 个字段值
字段路径原始值
codeSASDBP7
statusPublished
type_of_curveExtrapolated to infinite dilution
angular_unit1/A
project.titleThree-dimensional structure of the 3'X-tail of hepatitis C virus RNA in monomeric and dimeric states.
project.publication.titleThree-dimensional structure of the 3'X-tail of hepatitis C virus RNA in monomeric and dimeric states.
project.publication.author_listCantero-Camacho Á, Fan L, Wang YX, Gallego J
project.publication.journalRNA
project.publication.doi10.1261/rna.060632.117
project.publication.pmid28630140
project.publication.published_date2017 Sep
project.statusreleased
project.submitted_date2016-11-23
project.released_date2017-06-26
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experiment.instrument.nameAdvanced Photon Source (APS), Argonne National Laboratory
experiment.instrument.cityLemont, IL
experiment.instrument.countryUSA
experiment.instrument.beamline_name12-ID-B SAXS/WAXS
experiment.instrument.beam_geometrynull
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experiment.instrument.xray_energynull
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experiment.sample.molecule[0].long_nameDomain 3'X of hepatitis C virus
experiment.sample.molecule[0].short_name3'X
experiment.sample.molecule[0].sequenceGGUGGCUCCAUCUUAGCCCUAGUCACGGCUAGCUGUGAAAGGUCCGUGAGCCGCUUGACUGCAGAGAGUGCUGAUACUGGCCUCUCUGCAGAUCAAGU
experiment.sample.molecule[0].organismHepatitis C virus
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experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
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experiment.sample.molecule[0].molecular_typeRNA
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experiment.sample.molecule[0].mw31.7
experiment.sample.molecule[0].total_mw31.7
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experiment.sample.molecule[0].molecule_sourcebiological
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experiment.sample.buffer.name10mM Tris 0.1 mM EDTA
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experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
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experiment.sample.buffer.pkanull
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experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameDomain 3'X of hepatitis C virus RNA at low ionic strength
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressValencia, Spain
experiment.contributor[0].affiliation[0].full_nameUniversidad Católica de Valencia
experiment.contributor[0].affiliation[0].webpagehttps://www.ucv.es/
experiment.contributor[0].contributor_nameJosé
experiment.contributor[0].contributor_surnameGallego
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2015-11-11
experiment.storage_temperature27.0
experiment.cell_temperature27.0
experiment.exposure_time1.0
experiment.number_of_frames30
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experiment.sample_detector_distance2.0
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experiment.total_exposure_timenull
experiment.seccolumnnull
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fits[0].models[0].pdb_link[]
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fits[0].models[0].user179
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fits[0].descriptionnull
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionGNOM 4.6
i0_calibration_standardnull
descriptionnull
experiment_descriptionSynchrotron SAXS data from solutions of Domain 3'X of hepatitis C virus RNA at low ionic strength in 10mM Tris 0.1 mM EDTA, pH 7, were collected on the 12ID-B SAXS/WAXS camera on the storage ring Advanced Photon Source (APS), Argonne National Laboratory (Lemont, IL, USA) using a Pilatus 2M detector at a sample-detector distance of 2 m and at a wavelength of λ = 0.0886 nm (I(s) vs s, where s = 4π sin θ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 0.4 and 1.5 mg/ml were measured at 27°C. 30 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted and the different curves were scaled for RNA concentration. The low angle data collected at lower concentrations were extrapolated to infinite dilution and merged with the higher concentration data to yield the final composite scattering curve.
tags[]
intensity_unitnull
experimental_mw36.8
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mwnull
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pddf_i00.09238
pddf_i0_error0.0
guinier_i00.092
guinier_i0_error0.0011
pddf_rg3.956
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guinier_rg3.732
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pddf_dmax14.8
pddf_dmax_error0.06
porod_volumenull
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guinier_point_first4
guinier_point_last19
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDBP7_datloglog_img.png
symmetrynull
last_modified2023-03-02T16:54:16.648202+01:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDBP7
statussuccess
started_at2026-08-11T16:37:49.874019+00:00
finished_at2026-08-11T16:37:57.359686+00:00
source_last_modified2023-03-02T16:54:16.648202+01:00
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查看完整 summary.json 原文
{
  "code": "SASDBP7",
  "status": "Published",
  "type_of_curve": "Extrapolated to infinite dilution",
  "angular_unit": "1/A",
  "project": {
    "title": "Three-dimensional structure of the 3'X-tail of hepatitis C virus RNA in monomeric and dimeric states.",
    "publication": {
      "title": "Three-dimensional structure of the 3'X-tail of hepatitis C virus RNA in monomeric and dimeric states.",
      "author_list": "Cantero-Camacho Á, Fan L, Wang YX, Gallego J",
      "journal": "RNA",
      "doi": "10.1261/rna.060632.117",
      "pmid": "28630140",
      "published_date": "2017 Sep"
    },
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}
查看完整 manifest.json 原文
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