SASDBW2

Zebrafish (Danio rerio) Arpin truncated C-terminal mutant (delta-C 16).

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2019-12-06T13:07:15.624532+01:00

Due to high concentration at the elution peak, the HPLC UV detector was saturated and the concentrations of the sample was consequently underestimated. In this case, the molecular mass is overestimated when assessing this parameter from I(0) and concentration.

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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Zebrafish (Danio rerio) Arpin truncated C-terminal mutant (delta-C 16).

浓度— – — 缓冲液 / pH50 mM HEPES 100mM NaCl 1mM TCEP / 7.5
实验温度15.0 设备 / 束线SOLEIL / SWING
波长0.1 nm曝光1.5 s × —

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Zebrafish (Danio rerio) Arpin truncated C-terminal mutant (delta-C 16).
查看序列
GSRIYDNTALLNKPVHNEKLSFTWDPIVHQSGHGVILEGTVVDFSRHAITDVKNRKERYNVLYIKPSRVHRRKYDSKGNEIEPNFSDTKKVNTGFLMSSFKVEAKGETDCLDERQLREIVNKEQLVKVTIKHCPREAFAFWISEAEMDKTELEPGQEVRLKTKGDGPFIFSSAKLDSGTVTKCNFAGDENAGASWTEKIMANKSNQENTG
proteinDanio rerioQ1LWJ61–210monomer分子数 123.78 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
11074[3]0.06196385–6.083321 1/nm含误差列缺失 01sasbdb/entries/w2/sasdbw2/source/SASDBW2.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)11.3—nm
i0Guinier0.0663e-05—
i0P(r)0.067——
mwExperimental25.5—kDa
mwPorod21.8—kDa
porod_volumePorod37.1—nm³
rgGuinier2.22—nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称50 mM HEPES 100mM NaCl 1mM TCEP缓冲液浓度50.0 mM
pH7.5添加剂100mM NaCl, 1mM TCEP
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2014-12-04储存 / 测量温度15.0 / 15.0
曝光时间1.5帧数—
波长0.1样品-探测器距离1.82
光源X-ray synchrotron探测器AVIEX PCCD170170
机构 / 束线SOLEIL / SWING · Saint-Aubin, France
q 范围0.062 – 6.083样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(4 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:134 个字段值
字段路径原始值
codeSASDBW2
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleHybrid Structural Analysis of the Arp2/3 Regulator Arpin Identifies Its Acidic Tail as a Primary Binding Epitope.
project.publication.titleHybrid Structural Analysis of the Arp2/3 Regulator Arpin Identifies Its Acidic Tail as a Primary Binding Epitope.
project.publication.author_listFetics S, Thureau A, Campanacci V, Aumont-Nicaise M, Dang I, Gautreau A, Pérez J, Cherfils J
project.publication.journalStructure
project.publication.doi10.1016/j.str.2015.12.001
project.publication.pmid26774128
project.publication.published_date2016 Feb 2
project.statusreleased
project.submitted_date2015-12-03
project.released_date2016-07-03
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experiment.instrument.detector.resolutionnull
experiment.instrument.nameSOLEIL
experiment.instrument.citySaint-Aubin
experiment.instrument.countryFrance
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experiment.sample.molecule[0].long_nameZebrafish (Danio rerio) Arpin truncated C-terminal mutant (delta-C 16).
experiment.sample.molecule[0].short_nameArpin-deltaC
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experiment.sample.molecule[0].organismDanio rerio
experiment.sample.molecule[0].uniprot_codeQ1LWJ6
experiment.sample.molecule[0].uniprot_range_first1
experiment.sample.molecule[0].uniprot_range_last210
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
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experiment.sample.molecule[0].mw23.78
experiment.sample.molecule[0].total_mw23.78
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experiment.sample.molecule[0].molecule_sourcebiological
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experiment.sample.buffer.name50 mM HEPES 100mM NaCl 1mM TCEP
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experiment.sample.buffer.commentnull
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experiment.sample.purity_methodnull
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experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
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experiment.sample.mixturenull
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experiment.flow_ratenull
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experiment.seccolumnnull
fits[]
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionnull
i0_calibration_standardnull
descriptionDue to high concentration at the elution peak, the HPLC UV detector was saturated and the concentrations of the sample was consequently underestimated. In this case, the molecular mass is overestimated when assessing this parameter from I(0) and concentration.
experiment_descriptionX-ray synchrotron radiation scattering data from solutions of zebrafish arpin (truncated C-terminal mutant lacking the last C-terminal 16 amino acids of the wild-type sequence) in 50mM HEPES, pH 7.5, 100mM NaCl, 1mM TCEP were collected at 15 C on the SWING Beamline, Synchrotron Soleil, Gif Sur Yvette, France using a PCCD170170 Aviex detector. These data are derived from size-exclusion chromatography-SAXS. Note: The original SAXS data where the momentum transfer s in inverse Angstroms (s = 4π sin θ/λ, where 2θ is the scattering angle) is included in the zip file associated with this entry.
tags[]
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experimental_mw25.5
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pddf_point_lastnull
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intensities_log_log_plotSASDBW2_datloglog_img.png
symmetrynull
last_modified2019-12-06T13:07:15.624532+01:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDBW2
statussuccess
started_at2026-08-11T13:47:39.975082+00:00
finished_at2026-08-11T13:47:49.030034+00:00
source_last_modified2019-12-06T13:07:15.624532+01:00
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查看完整 summary.json 原文
{
  "code": "SASDBW2",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "Hybrid Structural Analysis of the Arp2/3 Regulator Arpin Identifies Its Acidic Tail as a Primary Binding Epitope.",
    "publication": {
      "title": "Hybrid Structural Analysis of the Arp2/3 Regulator Arpin Identifies Its Acidic Tail as a Primary Binding Epitope.",
      "author_list": "Fetics S, Thureau A, Campanacci V, Aumont-Nicaise M, Dang I, Gautreau A, Pérez J, Cherfils J",
      "journal": "Structure",
      "doi": "10.1016/j.str.2015.12.001",
      "pmid": "26774128",
      "published_date": "2016 Feb 2"
    },
    "status": "released",
    "submitted_date": "2015-12-03",
    "released_date": "2016-07-03"
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  "intensities_log_log_plot": "SASDBW2_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2019-12-06T13:07:15.624532+01:00",
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}
查看完整 manifest.json 原文
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