SASDBW6

Suppressor of Copper Sensitivity C protein (ScsC) from P. mirabilis (mutant)

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2020-08-28T15:28:08.238471+02:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Suppressor of Copper Sensitivity C protein (ScsC) from P. mirabilis (mutant)

浓度0.6 – 5.3 缓冲液 / pH25 mM HEPES 150mM NaCl, 1mM DTT, / 7.5
实验温度10.0 设备 / 束线Australian Synchrotron / SAXS/WAXS
波长0.1033 nm曝光23.0 s × 23

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Suppressor of Copper Sensitivity C protein (mutant)
查看序列
AALNAAQEKEVRALVRDTLVSNPEILEEAIMALQTKAEAAAKEAAAKAALASEHDALYNDAASPRIGAKDAKLVLVSFTDYNCPYCKRFDPLLEKITEQYPDVAVIIKPLPFKGESSAKASQAVLSVWKEDPKAFLALHQRLMQKKTMLDNASIEDAMKSTNTSKIKLTDDSLKTLQNNLELSRKLGIQGTPATVIGDTILPGAVDYDQLEIIVKEQLAKVKK
proteinProteus mirabilisC2LPE222–243trimer分子数 324.32 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1171[3]0.0105654467–0.249890849 1/A含误差列缺失 00sasbdb/entries/w6/sasdbw6/source/SASDBW6.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)13.50.7Å
i0Guinier0.06630.0001—
i0P(r)0.066487e-05—
mwExperimental76.4—kDa
mwGuinier I(0)76.43.5kDa
porod_volumePorod108.0—ų
rgGuinier4.380.02Å
rgP(r)4.410.01Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称25 mM HEPES 150mM NaCl, 1mM DTT,缓冲液浓度—
pH7.5添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2016-07-22储存 / 测量温度4.0 / 10.0
曝光时间23.0帧数23
波长0.1033样品-探测器距离1.485
光源X-ray synchrotron探测器Pilatus 1M
机构 / 束线Australian Synchrotron / SAXS/WAXS · Melbourne, Australia
q 范围0.106 – 2.499样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(15 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:221 个字段值
字段路径原始值
codeSASDBW6
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleA shape-shifting redox foldase contributes to Proteus mirabilis copper resistance.
project.publication.titleA shape-shifting redox foldase contributes to Proteus mirabilis copper resistance.
project.publication.author_listFurlong EJ, Lo AW, Kurth F, Premkumar L, Totsika M, Achard MES, Halili MA, Heras B, Whitten AE, Choudhury HG, Schembri MA, Martin JL
project.publication.journalNat Commun
project.publication.doi10.1038/ncomms16065
project.publication.pmid28722010
project.publication.published_date2017 Jul 19
project.statusreleased
project.submitted_date2016-10-04
project.released_date2017-06-16
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experiment.instrument.detector.typeDectris
experiment.instrument.detector.namePilatus 1M
experiment.instrument.detector.resolution172.0
experiment.instrument.nameAustralian Synchrotron
experiment.instrument.cityMelbourne
experiment.instrument.countryAustralia
experiment.instrument.beamline_nameSAXS/WAXS
experiment.instrument.beam_geometryPoint
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourceTrue
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameSuppressor of Copper Sensitivity C protein (mutant)
experiment.sample.molecule[0].short_namePmScsC (DsbA-like)
experiment.sample.molecule[0].sequenceAALNAAQEKEVRALVRDTLVSNPEILEEAIMALQTKAEAAAKEAAAKAALASEHDALYNDAASPRIGAKDAKLVLVSFTDYNCPYCKRFDPLLEKITEQYPDVAVIIKPLPFKGESSAKASQAVLSVWKEDPKAFLALHQRLMQKKTMLDNASIEDAMKSTNTSKIKLTDDSLKTLQNNLELSRKLGIQGTPATVIGDTILPGAVDYDQLEIIVKEQLAKVKK
experiment.sample.molecule[0].organismProteus mirabilis
experiment.sample.molecule[0].uniprot_codeC2LPE2
experiment.sample.molecule[0].uniprot_range_first22
experiment.sample.molecule[0].uniprot_range_last243
experiment.sample.molecule[0].oligomerizationtrimer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequencenull
experiment.sample.molecule[0].mw24.32
experiment.sample.molecule[0].total_mw72.96
experiment.sample.molecule[0].number_molecules3
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name25 mM HEPES 150mM NaCl, 1mM DTT,
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameSuppressor of Copper Sensitivity C protein (ScsC) from P. mirabilis (mutant)
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameANSTO
experiment.contributor[0].affiliation[0].addressKirrawee DC, NSW 2232, Australia
experiment.contributor[0].affiliation[0].full_nameAustralian Nuclear Science and Technology Organisation
experiment.contributor[0].affiliation[0].webpage
experiment.contributor[0].contributor_nameAndrew
experiment.contributor[0].contributor_surnameWhitten
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2016-07-22
experiment.storage_temperature4.0
experiment.cell_temperature10.0
experiment.exposure_time23.0
experiment.number_of_frames23
experiment.wavelength0.1033
experiment.sample_detector_distance1.485
experiment.concentration_min0.6
experiment.concentration_max5.3
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pddf_softwareATSAS GNOM
pddf_software_versionGNOM v4.6
i0_calibration_standardnull
descriptionnull
experiment_descriptionX-ray synchrotron radiation scattering data from solutions of a Suppressor of Copper Sensitivity C mutant protein (ScsC) from P. mirabilis in 25 mM HEPES 150mM NaCl, 1mM DTT, pH 7.5 were collected on the SAXS/WAXS beam line of the Australian Synchrotron (Melbourne, Australia) using a 2D Photon counting Pilatus 1M-W pixel detector (I(s) vs s, where s = 4π sin θ/λ and 2θ is the scattering angle). Twenty three successive 1 second frames were collected across solute concentrations of 0.60-5.30 mg/ml. The SAXS data displayed this entry was derived from a 1.30 mg/ml sample. The data were normalized to the intensity of the transmitted beam and radially averaged and the scattering of the solvent-blank was subtracted. The models and corresponding fits include those derived from rigid-body modelling using CORAL (top) and a representative ensemble of four trimeric ScsC structures determined using ensemble optimization method (EOM). The Rg and Dmax distributions derived from EOM are included in the full entry zip archive.
tags[]
intensity_unitnull
experimental_mw76.4
experimental_mw_errornull
guinier_i0_mw76.4
guinier_i0_mw_error3.5
porod_mwnull
porod_mw_errornull
pddf_i00.06648
pddf_i0_error7e-05
guinier_i00.0663
guinier_i0_error0.0001
pddf_rg4.41
pddf_rg_error0.01
guinier_rg4.38
guinier_rg_error0.02
pddf_dmax13.5
pddf_dmax_error0.7
porod_volume108.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first1
guinier_point_last14
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDBW6_datloglog_img.png
symmetrynull
last_modified2020-08-28T15:28:08.238471+02:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDBW6
statussuccess
started_at2026-08-11T15:17:06.266925+00:00
finished_at2026-08-11T15:17:17.634260+00:00
source_last_modified2020-08-28T15:28:08.238471+02:00
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查看完整 summary.json 原文
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    "title": "A shape-shifting redox foldase contributes to Proteus mirabilis copper resistance.",
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      "title": "A shape-shifting redox foldase contributes to Proteus mirabilis copper resistance.",
      "author_list": "Furlong EJ, Lo AW, Kurth F, Premkumar L, Totsika M, Achard MES, Halili MA, Heras B, Whitten AE, Choudhury HG, Schembri MA, Martin JL",
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      "doi": "10.1038/ncomms16065",
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            "address": "Kirrawee DC, NSW 2232, Australia",
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  "last_modified": "2020-08-28T15:28:08.238471+02:00",
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}
查看完整 manifest.json 原文
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