SASDC27

Saposin nanoparticle (SapNP) SapA:DOPC

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Extrapolated to infinite dilution 最后更新:2023-06-21T07:56:39.492710+02:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Saposin nanoparticle (SapNP) SapA:DOPC

浓度— – — 缓冲液 / pHPBS / 7.4
实验温度10.0 设备 / 束线PETRA III / EMBL P12
波长0.124 nm曝光0.05 s × 20

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
saposin-a
查看序列
SMSLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLCES
proteinHomo sapiensP0760260–140monomer分子数 19.084 kDa
1,2-dioleoyl-sn-glycero-3-phosphocholineothersynthetic construct——–—other分子数 —0.78 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
11821[3]0.0194587–5.00746 1/nm含误差列缺失 03sasbdb/entries/27/sasdc27/source/SASDC27.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)11.50.5nm
i0Guinier40271.055.0arbitrary
i0P(r)39720.040.0arbitrary
mwExperimental33.05.0kDa
mwPorod56.06.0kDa
porod_volumePorod96.010.0nm³
rgGuinier4.10.1nm
rgP(r)4.00.1nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称PBS缓冲液浓度—
pH7.4添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代True / —

采集条件与仪器

测量日期2016-12-15储存 / 测量温度10.0 / 10.0
曝光时间0.05帧数20
波长0.124样品-探测器距离3.1
光源X-ray synchrotron探测器Pilatus 2M
机构 / 束线PETRA III / EMBL P12 · DESY; Hamburg, Germany
q 范围0.019 – 5.007样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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pddfsasbdb/entries/27/sasdc27/source/SASDC27.outdownloaded1028348d063561c9f85b879c5f1d8da1af4eadccd3e8559a64411fd954e53463805f4e下载查看原文件源站
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curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(4 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:173 个字段值
字段路径原始值
codeSASDC27
statusPublished
type_of_curveExtrapolated to infinite dilution
angular_unit1/nm
project.titleSaposin Lipid Nanoparticles: A Highly Versatile and Modular Tool for Membrane Protein Research.
project.publication.titleSaposin Lipid Nanoparticles: A Highly Versatile and Modular Tool for Membrane Protein Research.
project.publication.author_listFlayhan A, Mertens HDT, Ural-Blimke Y, Martinez Molledo M, Svergun DI, Löw C
project.publication.journalStructure
project.publication.doi10.1016/j.str.2018.01.007
project.publication.pmid29413323
project.publication.published_date2018 Feb 6
project.statusreleased
project.submitted_date2017-08-09
project.released_date2018-02-07
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experiment.instrument.detector.resolutionnull
experiment.instrument.namePETRA III
experiment.instrument.cityDESY; Hamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL P12
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
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experiment.sample.molecule[0].short_namesapA
experiment.sample.molecule[0].sequenceSM SLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLCES
experiment.sample.molecule[0].organismHomo sapiens
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experiment.sample.molecule[0].uniprot_range_first60
experiment.sample.molecule[0].uniprot_range_last140
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
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experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.molecule[1].long_name1,2-dioleoyl-sn-glycero-3-phosphocholine
experiment.sample.molecule[1].short_nameDOPC
experiment.sample.molecule[1].sequencenull
experiment.sample.molecule[1].organismsynthetic construct
experiment.sample.molecule[1].uniprot_codenull
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experiment.sample.molecule[1].uniprot_range_lastnull
experiment.sample.molecule[1].oligomerizationother
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experiment.sample.molecule[1].uniprot_sequencenull
experiment.sample.molecule[1].mw0.78
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experiment.sample.molecule[1].molecule_sourcebiological
experiment.sample.molecule[1].molecule_descriptionnull
experiment.sample.buffer.namePBS
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experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
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experiment.sample.buffer.pka7.0
experiment.sample.buffer.ph7.4
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameSaposin nanoparticle (SapNP) SapA:DOPC
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixtureTrue
experiment.contributor[0].affiliation[0].short_nameEMBL-Hamburg
experiment.contributor[0].affiliation[0].addressNotkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_nameHaydyn
experiment.contributor[0].contributor_surnameMertens
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2016-12-15
experiment.storage_temperature10.0
experiment.cell_temperature10.0
experiment.exposure_time0.05
experiment.number_of_frames20
experiment.wavelength0.124
experiment.sample_detector_distance3.1
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experiment.concentration_maxnull
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.019
experiment.s_max5.007
experiment.total_exposure_time1.0
experiment.seccolumnnull
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fits[0].p_value0.029982
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pddf_softwareATSAS GNOM
pddf_software_version2.9.0
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descriptionnull
experiment_descriptionnull
tags[]
intensity_unitarbitrary
experimental_mw33.0
experimental_mw_error5.0
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw56.0
porod_mw_error6.0
pddf_i039720.0
pddf_i0_error40.0
guinier_i040271.0
guinier_i0_error55.0
pddf_rg4.0
pddf_rg_error0.1
guinier_rg4.1
guinier_rg_error0.1
pddf_dmax11.5
pddf_dmax_error0.5
porod_volume96.0
porod_volume_error10.0
estimated_volumenull
estimated_volume_errornull
guinier_point_first32
guinier_point_last105
pddf_point_first32
pddf_point_last1200
i0_calibration_standard_datanull
intensities_log_log_plotSASDC27_datloglog_img.png
symmetrynull
last_modified2023-06-21T07:56:39.492710+02:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDC27
statussuccess
started_at2026-08-11T15:20:04.005759+00:00
finished_at2026-08-11T15:20:13.397199+00:00
source_last_modified2023-06-21T07:56:39.492710+02:00
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查看完整 summary.json 原文
{
  "code": "SASDC27",
  "status": "Published",
  "type_of_curve": "Extrapolated to infinite dilution",
  "angular_unit": "1/nm",
  "project": {
    "title": "Saposin Lipid Nanoparticles: A Highly Versatile and Modular Tool for Membrane Protein Research.",
    "publication": {
      "title": "Saposin Lipid Nanoparticles: A Highly Versatile and Modular Tool for Membrane Protein Research.",
      "author_list": "Flayhan A, Mertens HDT, Ural-Blimke Y, Martinez Molledo M, Svergun DI, Löw C",
      "journal": "Structure",
      "doi": "10.1016/j.str.2018.01.007",
      "pmid": "29413323",
      "published_date": "2018 Feb 6"
    },
    "status": "released",
    "submitted_date": "2017-08-09",
    "released_date": "2018-02-07"
  },
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查看完整 manifest.json 原文
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