SASDC86

Extracellular domain of human B-lymphocyte cell receptor CD22 in complex with alpha 2,6 sialyllactose

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2023-03-02T16:54:16.648202+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Extracellular domain of human B-lymphocyte cell receptor CD22 in complex with alpha 2,6 sialyllactose

浓度— – 5.0 缓冲液 / pH20 mM Tris 150 mM NaCl / 9.0
实验温度22.0 设备 / 束线Advanced Photon Source (APS), Argonne National Laboratory / 12-ID-B SAXS/WAXS
波长0.08856 nm曝光1.0 s × 30

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
CD22 extracellular domain
查看序列
>CD22MSLWLLEGVPMRQAAVTSTSLTIKSVFTRSELKFSPQWSHHGKIVTCQLQDADGKFLSNDTVQLNVKHTPKLEIKVTPSDAIVREGDSVTMTCEVSSSNPEYTTVSWLKDGTSLKKQNTFTLNLREVTKDQSGKYCCQVSNDVGPGRSEEVFLQVQYAPEPSTVQILHSPAVEGSQVEFLCMSLANPLPTNYTWYHNGKEMQGRTEEKVHIPKILPWHAGTYSCVAENILGTGQRGPGAELDVQYPPKKVTTVIQNPMPIREGDTVTLSCNYNSSNPSVTRYEWKPHGAWEEPSLGVLKIQNVGWDNTTIACAACNSWCSWASPVALNVQYAPRDVRVRKIKPLSEIHSGNSVSLQCDFSSSHPKEVQFFWEKNGRLLGKESQLNFDSISPEDAGSYSCWVNNSIGQTASKAWTLEVLYAPRRLRVSMSPGDQVMEGKSATLTCESDANPPVSHYTWFDWNNQSLPYHSQKLRLEPVKVQHSGAYWCQGTNSVGKGRSPLSTLTVYYSPETIGRRVAVGLGSCLAILILAICGLKLQRRWKRTQSQQGLQENSSGQSFFVRNKKVRRAPLSEGPHSLGCYNPMMEDGISYTTLRFPEMNIPRTGDAESSEMQRPPPDCDDTVTYSALHKRQVGDYENVIPDFPEDEGIHYSELIQFGVGERPQAQENVDYVILKHHHHHHH
proteinHomo sapiensP20273—–—monomer分子数 190.0 kDa
alpha(2,6)-Sialyllactoseother———–—unknown分子数 —0.634 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1304[3]0.0024–0.516 1/A含误差列缺失 00sasbdb/entries/86/sasdc86/source/SASDC86.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)29.8—Å
i0Guinier0.306715——
i0P(r)0.3072——
mwExperimental90.0—kDa
rgGuinier8.0960.85Å
rgP(r)8.479—Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称20 mM Tris 150 mM NaCl缓冲液浓度—
pH9.0添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2016-04-21储存 / 测量温度— / 22.0
曝光时间1.0帧数30
波长0.08856样品-探测器距离3.6
光源X-ray synchrotron探测器Pilatus 2M
机构 / 束线Advanced Photon Source (APS), Argonne National Laboratory / 12-ID-B SAXS/WAXS · Lemont, IL, USA
q 范围0.024 – 5.16样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
curvesasbdb/entries/86/sasdc86/source/SASDC86.datdownloaded138508c4d3e79ffa84a4aa7264cd3529fbc312ad97a7d94591108cb8384b7cb1d93cf下载查看原文件源站
full_entry_zipsasbdb/entries/86/sasdc86/source/SASDC86.zipdownloaded1917643a8b5d2c86728de9d423374a6ce9fe166a3e426f97e58bc5bb241664eb07806下载查看原文件源站
pddfsasbdb/entries/86/sasdc86/source/SASDC86.outdownloaded19702b08fd377e00d9653ac8d03506e28bd300d6236c3a362b5bc6a76dea54064a6a2下载查看原文件源站
sascifsasbdb/entries/86/sasdc86/source/SASDC86.sascifdownloaded94252e7fa0f21b01a94d3a88e0bffce3b0b06c76acf422bbf72d4ee06000ab2c614f2下载查看原文件源站
summarysasbdb/entries/86/sasdc86/source/summary.jsondownloaded84881695152a991ac38ea7ec0f66d3a059ec9a20a3bb38233083d3767e3039122070下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(4 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:173 个字段值
字段路径原始值
codeSASDC86
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleMolecular basis of human CD22 function and therapeutic targeting.
project.publication.titleMolecular basis of human CD22 function and therapeutic targeting.
project.publication.author_listEreño-Orbea J, Sicard T, Cui H, Mazhab-Jafari MT, Benlekbir S, Guarné A, Rubinstein JL, Julien JP
project.publication.journalNat Commun
project.publication.doi10.1038/s41467-017-00836-6
project.publication.pmid28970495
project.publication.published_date2017 Oct 2
project.statusreleased
project.submitted_date2017-07-14
project.released_date2017-10-12
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDC86.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDC86.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDC86_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDC86_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDC86_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDC86_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDC86.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus 2M
experiment.instrument.detector.resolutionnull
experiment.instrument.nameAdvanced Photon Source (APS), Argonne National Laboratory
experiment.instrument.cityLemont, IL
experiment.instrument.countryUSA
experiment.instrument.beamline_name12-ID-B SAXS/WAXS
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameCD22 extracellular domain
experiment.sample.molecule[0].short_nameCD22
experiment.sample.molecule[0].sequence>CD22 MSLWLLEGVPMRQAAVTSTSLTIKSVFTRSELKFSPQWSHHGKIVTCQLQDADGKF LSNDTVQLNVKHTPKLEIKVTPSDAIVREGDSVTMTCEVSSSNPEYTTVSWLKDGTSLKK QNTFTLNLREVTKDQSGKYCCQVSNDVGPGRSEEVFLQVQYAPEPSTVQILHSPAVEGSQ VEFLCMSLANPLPTNYTWYHNGKEMQGRTEEKVHIPKILPWHAGTYSCVAENILGTGQRG PGAELDVQYPPKKVTTVIQNPMPIREGDTVTLSCNYNSSNPSVTRYEWKPHGAWEEPSLG VLKIQNVGWDNTTIACAACNSWCSWASPVALNVQYAPRDVRVRKIKPLSEIHSGNSVSLQ CDFSSSHPKEVQFFWEKNGRLLGKESQLNFDSISPEDAGSYSCWVNNSIGQTASKAWTLE VLYAPRRLRVSMSPGDQVMEGKSATLTCESDANPPVSHYTWFDWNNQSLPYHSQKLRLEP VKVQHSGAYWCQGTNSVGKGRSPLSTLTVYYSPETIGRRVAVGLGSCLAILILAICGLKL QRRWKRTQSQQGLQENSSGQSFFVRNKKVRRAPLSEGPHSLGCYNPMMEDGISYTTLRFP EMNIPRTGDAESSEMQRPPPDCDDTVTYSALHKRQVGDYENVIPDFPEDEGIHYSELIQF GVGERPQAQENVDYVILKHHHHHHH
experiment.sample.molecule[0].organismHomo sapiens
experiment.sample.molecule[0].uniprot_codeP20273
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMHLLGPWLLLLVLEYLAFSDSSKWVFEHPETLYAWEGACVWIPCTYRALDGDLESFILFH NPEYNKNTSKFDGTRLYESTKDGKVPSEQKRVQFLGDKNKNCTLSIHPVHLNDSGQLGLR MESKTEKWMERIHLNVSERPFPPHIQLPPEIQESQEVTLTCLLNFSCYGYPIQLQWLLEG VPMRQAAVTSTSLTIKSVFTRSELKFSPQWSHHGKIVTCQLQDADGKFLSNDTVQLNVKH TPKLEIKVTPSDAIVREGDSVTMTCEVSSSNPEYTTVSWLKDGTSLKKQNTFTLNLREVT KDQSGKYCCQVSNDVGPGRSEEVFLQVQYAPEPSTVQILHSPAVEGSQVEFLCMSLANPL PTNYTWYHNGKEMQGRTEEKVHIPKILPWHAGTYSCVAENILGTGQRGPGAELDVQYPPK KVTTVIQNPMPIREGDTVTLSCNYNSSNPSVTRYEWKPHGAWEEPSLGVLKIQNVGWDNT TIACAACNSWCSWASPVALNVQYAPRDVRVRKIKPLSEIHSGNSVSLQCDFSSSHPKEVQ FFWEKNGRLLGKESQLNFDSISPEDAGSYSCWVNNSIGQTASKAWTLEVLYAPRRLRVSM SPGDQVMEGKSATLTCESDANPPVSHYTWFDWNNQSLPYHSQKLRLEPVKVQHSGAYWCQ GTNSVGKGRSPLSTLTVYYSPETIGRRVAVGLGSCLAILILAICGLKLQRRWKRTQSQQG LQENSSGQSFFVRNKKVRRAPLSEGPHSLGCYNPMMEDGISYTTLRFPEMNIPRTGDAES SEMQRPPPDCDDTVTYSALHKRQVGDYENVIPDFPEDEGIHYSELIQFGVGERPQAQENV DYVILKH
experiment.sample.molecule[0].mw90.0
experiment.sample.molecule[0].total_mw90.0
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.molecule[1].long_namealpha(2,6)-Sialyllactose
experiment.sample.molecule[1].short_namenull
experiment.sample.molecule[1].sequencenull
experiment.sample.molecule[1].organismnull
experiment.sample.molecule[1].uniprot_codenull
experiment.sample.molecule[1].uniprot_range_firstnull
experiment.sample.molecule[1].uniprot_range_lastnull
experiment.sample.molecule[1].oligomerizationunknown
experiment.sample.molecule[1].molecular_typeother
experiment.sample.molecule[1].uniprot_sequencenull
experiment.sample.molecule[1].mw0.634
experiment.sample.molecule[1].total_mw0.634
experiment.sample.molecule[1].number_molecules0
experiment.sample.molecule[1].complex_stateFalse
experiment.sample.molecule[1].deuterationnull
experiment.sample.molecule[1].molecule_sourcebiological
experiment.sample.molecule[1].molecule_descriptionnull
experiment.sample.buffer.name20 mM Tris 150 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph9.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameExtracellular domain of human B-lymphocyte cell receptor CD22 in complex with alpha 2,6 sialyllactose
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressToronto, ON, Canada
experiment.contributor[0].affiliation[0].full_nameThe Hospital for Sick Children
experiment.contributor[0].affiliation[0].webpagehttps://www.sickkids.ca/
experiment.contributor[0].contributor_nameJune
experiment.contributor[0].contributor_surnameEreno Orbea
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2016-04-21
experiment.storage_temperaturenull
experiment.cell_temperature22.0
experiment.exposure_time1.0
experiment.number_of_frames30
experiment.wavelength0.08856
experiment.sample_detector_distance3.6
experiment.concentration_minnull
experiment.concentration_max5.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.024
experiment.s_max5.16
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDC86_fit1_model1_img.png
fits[0].models[0].softwareDAMMIF
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modeldummy
fits[0].models[0].software_version
fits[0].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDC86_fit1_model1.pdb
fits[0].models[0].model_mwnull
fits[0].models[0].bead_radius4.0
fits[0].models[0].lognull
fits[0].models[0].symmetry
fits[0].models[0].comment
fits[0].models[0].user231
fits[0].fit_unit1/A
fits[0].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDC86_fit1_fit_img.png
fits[0].softwareDAMMIF
fits[0].chi_square_value2.668
fits[0].p_value0.035818
fits[0].fit_residual_plotSASDC86_fit1_fitresiduals_img.png
fits[0].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDC86_fit1.fir
fits[0].fit_lognull
fits[0].software_version
fits[0].descriptionnull
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionnull
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitnull
experimental_mw90.0
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mwnull
porod_mw_errornull
pddf_i00.3072
pddf_i0_errornull
guinier_i00.306715
guinier_i0_errornull
pddf_rg8.479
pddf_rg_errornull
guinier_rg8.096
guinier_rg_error0.85
pddf_dmax29.8
pddf_dmax_errornull
porod_volumenull
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first50
guinier_point_last68
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDC86_datloglog_img.png
symmetrynull
last_modified2023-03-02T16:54:16.648202+01:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDC86
statussuccess
started_at2026-08-11T15:03:39.740080+00:00
finished_at2026-08-11T15:03:47.327912+00:00
source_last_modified2023-03-02T16:54:16.648202+01:00
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files[4].rolefull_entry_zip
files[4].zip_member_count4
files[4].zip_validationcentral_directory_readable
查看完整 summary.json 原文
{
  "code": "SASDC86",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "Molecular basis of human CD22 function and therapeutic targeting.",
    "publication": {
      "title": "Molecular basis of human CD22 function and therapeutic targeting.",
      "author_list": "Ereño-Orbea J, Sicard T, Cui H, Mazhab-Jafari MT, Benlekbir S, Guarné A, Rubinstein JL, Julien JP",
      "journal": "Nat Commun",
      "doi": "10.1038/s41467-017-00836-6",
      "pmid": "28970495",
      "published_date": "2017 Oct 2"
    },
    "status": "released",
    "submitted_date": "2017-07-14",
    "released_date": "2017-10-12"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDC86.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDC86.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDC86_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDC86_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDC86_pofr_img.png",
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查看完整 manifest.json 原文
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