查看完整 summary.json 原文
{
"code": "SASDC96",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "Small angle X-ray scattering as a complementary tool for high-throughput structural studies.",
"publication": {
"title": "Small angle X-ray scattering as a complementary tool for high-throughput structural studies.",
"author_list": "Grant TD, Luft JR, Wolfley JR, Tsuruta H, Martel A, Montelione GT, Snell EH",
"journal": "Biopolymers",
"doi": "10.1002/bip.21630",
"pmid": "21462184",
"published_date": "2011 Aug"
},
"status": "released",
"submitted_date": "2017-07-12",
"released_date": "2017-07-17"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDC96.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDC96.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDC96_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDC96_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDC96_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDC96_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDC96.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Rayonix MX225-HE",
"resolution": null
},
"name": "Stanford Synchrotron Radiation Lightsource (SSRL)",
"city": "Menlo Park, CA",
"country": "USA",
"beamline_name": "BL4-2",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Diguanylate cyclase with PAS/PAC sensor",
"short_name": null,
"sequence": "MTKAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEW\r\nVVNFCVKQSECGVDHEADYRALHRDGHYVWIRDVVHVVRDDSGEVEALIGF\r\nMFDISLEHHHHHH",
"organism": "Marinobacter hydrocarbonoclasticus",
"uniprot_code": "A1U4R9",
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "dimer",
"molecular_type": "protein",
"uniprot_sequence": "MPEQSIEMTPDSSVYKALLESTKAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDW\nATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHYVWIRDVVHVVRDDSGEVEALI\nGFMFDISERKKTEEKLIALQKKLEEYSFKDGLTGLSNRRMFDTVIEDTWLSAQRNRQPLS\nLILLDIDHFKQYNDLYGHIQGDECLRRVSSVLAKAIKRPKDFVGRFGGEEFVIVLPESDA\nDAAVRVAERCISELLREQIPHADNSASQLVTLSMGIGTIIPSQNDSLTEFLATVDGRLYE\nAKDAGRNRIVAA",
"mw": 13.601,
"total_mw": 27.202,
"number_molecules": 2,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "5 mM DTT 100 mM NaCl 10 mM Tris-HCl 0.02 % NaN3",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "N-terminal domain of Diguanylate cyclase with PAS/PAC sensor (Maqu_2914) from Marinobacter aquaeolei, Northeast Structural Genomics Consortium Target MqR66C",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": null,
"full_name": "University at Buffalo",
"webpage": null
}
],
"contributor_name": "Tom",
"contributor_surname": "Grant",
"orcid": "https://orcid.org/0000-0002-8583-3700"
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2010-02-12",
"storage_temperature": -80.0,
"cell_temperature": 20.0,
"exposure_time": 1.0,
"number_of_frames": 20,
"wavelength": 0.13,
"sample_detector_distance": 1.5,
"concentration_min": 2.57,
"concentration_max": 7.08,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.159,
"s_max": 3.496,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDC96_fit1_model1_img.png",
"software": "DAMFILT",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDC96_fit1_model1.pdb",
"model_mw": 21.84,
"bead_radius": 1.75,
"log": "https://www.sasbdb.org/media/log_files/damsel_Gq79pRe.log",
"symmetry": "",
"comment": "",
"user": 228
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDC96_fit1_fit_img.png",
"software": "DAMMIF",
"chi_square_value": 1.35,
"p_value": 0.079643,
"fit_residual_plot": "SASDC96_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDC96_fit1.fir",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/855a_3.log",
"software_version": "",
"description": null
},
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDC96_fit2_model1_img.png",
"software": "PDB (Protein Data Bank)",
"pdb_link": [
{
"pdb_code": "3h9w",
"ext_code": "3H9W",
"ext_type": "pdb",
"difference_with_model": "identical"
}
],
"model_title": null,
"type_of_model": "atomic",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDC96_fit2_model1.pdb",
"model_mw": 25.87,
"bead_radius": 1.9,
"log": "https://www.sasbdb.org/media/log_files/3h9w-dimer00.log",
"symmetry": "",
"comment": "",
"user": 228
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDC96_fit2_fit_img.png",
"software": "CRYSOL",
"chi_square_value": 2.61,
"p_value": 0.0,
"fit_residual_plot": "fit4columns995_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDC96_fit2.fit",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/3h9w-dimer00.log",
"software_version": "",
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "4.5a",
"i0_calibration_standard": null,
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": null,
"experimental_mw": 24.56,
"experimental_mw_error": null,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": 24.56,
"porod_mw_error": null,
"pddf_i0": 1197.0,
"pddf_i0_error": null,
"guinier_i0": 1191.41,
"guinier_i0_error": null,
"pddf_rg": 1.98,
"pddf_rg_error": null,
"guinier_rg": 1.97,
"guinier_rg_error": null,
"pddf_dmax": 6.74,
"pddf_dmax_error": null,
"porod_volume": 40.76,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": null,
"guinier_point_last": null,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDC96_datloglog_img.png",
"symmetry": null,
"last_modified": "2019-12-06T13:07:15.624532+01:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
"code": "SASDC96",
"status": "success",
"started_at": "2026-08-11T15:04:18.740546+00:00",
"finished_at": "2026-08-11T15:04:27.029954+00:00",
"source_last_modified": "2019-12-06T13:07:15.624532+01:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDC96/",
"path": "/data/saxsdb/sasbdb/entries/96/sasdc96/source/summary.json",
"size": 8272,
"sha256": "807b328bfddda16980d797b1048b5a8e1798670fa9999bf589019695d03a4e77"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDC96.dat",
"path": "/data/saxsdb/sasbdb/entries/96/sasdc96/source/SASDC96.dat",
"size": 9214,
"sha256": "d0dde7f51eb07601206639da04c25ba262b0bcf7cdec174c900677c9d8dceebb",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDC96.out",
"path": "/data/saxsdb/sasbdb/entries/96/sasdc96/source/SASDC96.out",
"size": 32679,
"sha256": "21c39cc4f0d9861245803c4b43fc8e7aa27a7a21bf2a82eab4defde641cdafef",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDC96.sascif",
"path": "/data/saxsdb/sasbdb/entries/96/sasdc96/source/SASDC96.sascif",
"size": 405531,
"sha256": "63ac55b90d45f58528a52a0af246693072c094da462a2b0bed80f9db706114d3",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDC96.zip",
"path": "/data/saxsdb/sasbdb/entries/96/sasdc96/source/SASDC96.zip",
"size": 77429,
"sha256": "6f335700f76c0ad8fd67df911a2334f64c13149a67cded3d1454bd653d615c1c",
"role": "full_entry_zip",
"zip_member_count": 6,
"zip_validation": "central_directory_readable"
}
]
}
