SASDCD6

MucBP domain of the adhesion protein PEPE_0118 from Pediococcus pentosaceus. Northeast Structural Genomics Consortium target id PtR41A

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2019-12-06T13:07:15.624532+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · MucBP domain of the adhesion protein PEPE_0118 from Pediococcus pentosaceus. Northeast Structural Genomics Consortium target id PtR41A

浓度2.53 – 7.67 缓冲液 / pH5 mM DTT 100 mM NaCl 10 mM Tris-HCl 0.02 % NaN3 / 7.5
实验温度20.0 设备 / 束线Stanford Synchrotron Radiation Lightsource (SSRL) / BL4-2
波长0.13 nm曝光1.0 s × 20

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Adhesion exoprotein
查看序列
MPNYDATHATSTETIHYVNEDGDQVFEDGGGKLDFTRTVTIDDVTNEVVEYGEWTPVTDDEFAAVTSPDKDGYTPDTSEVAAQKPDMTDGPDGTVKDVEVTVTYTANPAVATITYVDDDENGKLEHHHHHH
proteinPediococcus pentosaceusQ03HU7—–—monomer分子数 114.384 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1412[3]0.0188487–0.349223 1/A含误差列缺失 00sasbdb/entries/d6/sasdcd6/source/SASDCD6.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)8.2—Å
i0Guinier249.39——
i0P(r)250.7——
mwExperimental11.09—kDa
mwPorod11.09—kDa
porod_volumePorod18.41—ų
rgGuinier2.32—Å
rgP(r)2.44—Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称5 mM DTT 100 mM NaCl 10 mM Tris-HCl 0.02 % NaN3缓冲液浓度—
pH7.5添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2010-02-12储存 / 测量温度-80.0 / 20.0
曝光时间1.0帧数20
波长0.13样品-探测器距离1.5
光源X-ray synchrotron探测器Rayonix MX225-HE
机构 / 束线Stanford Synchrotron Radiation Lightsource (SSRL) / BL4-2 · Menlo Park, CA, USA
q 范围0.188 – 3.492样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
curvesasbdb/entries/d6/sasdcd6/source/SASDCD6.datdownloaded106591426bf62d2bf19627c63e260825124cb5e315543c7458c88d24d4ed125ee9951下载查看原文件源站
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pddfsasbdb/entries/d6/sasdcd6/source/SASDCD6.outdownloaded355707177d0def637bf292eb1aec4aa7c96cb69316bee8841576d7595947e07725848下载查看原文件源站
sascifsasbdb/entries/d6/sasdcd6/source/SASDCD6.sascifdownloaded22245547157309aa712b72119063caee09719892fd2853ff3bbf9d8a953d30a31bbcc3下载查看原文件源站
summarysasbdb/entries/d6/sasdcd6/source/summary.jsondownloaded1101819330e6efda3819408abe13a5d4597181ec6fbfc23178f228c8619d9fa849a2c下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(6 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:182 个字段值
字段路径原始值
codeSASDCD6
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleSmall angle X-ray scattering as a complementary tool for high-throughput structural studies.
project.publication.titleSmall angle X-ray scattering as a complementary tool for high-throughput structural studies.
project.publication.author_listGrant TD, Luft JR, Wolfley JR, Tsuruta H, Martel A, Montelione GT, Snell EH
project.publication.journalBiopolymers
project.publication.doi10.1002/bip.21630
project.publication.pmid21462184
project.publication.published_date2011 Aug
project.statusreleased
project.submitted_date2017-07-12
project.released_date2017-07-17
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDCD6.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDCD6.dat
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experiment.instrument.detector.typenull
experiment.instrument.detector.nameRayonix MX225-HE
experiment.instrument.detector.resolutionnull
experiment.instrument.nameStanford Synchrotron Radiation Lightsource (SSRL)
experiment.instrument.cityMenlo Park, CA
experiment.instrument.countryUSA
experiment.instrument.beamline_nameBL4-2
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameAdhesion exoprotein
experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequenceMPNYDATHATSTETIHYVNEDGDQVFEDGGGKLDFTRTVTIDDVTNEVVEY GEWTPVTDDEFAAVTSPDKDGYTPDTSEVAAQKPDMTDGPDGTVKDVEVTV TYTANPAVATITYVDDDENGKLEHHHHHH
experiment.sample.molecule[0].organismPediococcus pentosaceus
experiment.sample.molecule[0].uniprot_codeQ03HU7
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMSKRIIKANQKVLHDSMEEKKRFHLYKSGKLWLVAGLATLSFATGGLSSQLMPQSVHADV ATSTAATKTDDSTTSSAVSSAAPSAAALKTSVATSSAVSSSATSVATSSATSSATSSSAS SETSSATTSEATSTASSSSSKASSASSSEATSKATSKAADQNSSVASSSATSKANSSSAS KASSTATTKSSSKATSAATKSAAATTNSSAVKKATTSAKSSASSSQELKTKFHLDDVATV KQTGNQLVFSVAANKKLTDEQYQAIVDYATRNHLKVKGLPKQAQATHKASAGTDLSDQFF EKGTNTKKGAHEGDYITVNGSVMSIYLDNTYYGRHHFLTKGETEKILDYVKEHNLTVEDK SPSGVAIVTQYIFEDGSKSYNRKNGNLELIASESRVSDPLIGLLATTMDEFLKGKWMICL GSDWIGGTSSDGNPANTWDKSYTNGQRKLGFFASHVISYTGDGGHRAGSALLEADAFVRL NVWEDQNVRLGFTKSGSDGIPSGNYDTNWAQLIVYDTANGTANSQSYSDNQNYKYFNLTD QQVRDIVRSTALDGASFYDQISTTKHVANSINDGSRGMPTSENQTYQGRVIVEVKDQDDN VLGYIEFDGDGTITVDGIDMGSIDSSAKDILANVGIDLTQLIKNLAAGTGVFGDEAVGTK YRYDAAKSNDADGEGQFSMSRDFEEAFSEEYGHMTVYFIEQATATVTVVDDDEDGAKVGD VVTVNGDIDTSKTTTVTIPDGYEYVGADGNGVVSSDGKTVTITLTDDDSDNVVIHLKHHL TPVTPDDPSDPNYDATHATSTETIHYVNEDGDQVFEDGGGKLDFTRTVTIDDVTNEVVEY GEWTPVTDDEFAAVTSPDKDGYTPDTSEVAAQKPDMTDGPDGTVKDVEVTVTYTANPAVA TITYVDDDENGKTVKTEDTKGKTDGLGVYTVKIPDGYEYVGAEGATFISCDGKTLKLRFT ADDSDNATIHLKHKHKDINPDDPGEYKDATHTTATQTVHYVNQDGDKVFDDDTSQTLNYE RGVTIDEVTGEVISYGDWTPVDGDEFGSVTSPDKPGYAVDTKVVSGEKPEITNGKDGKVN DVEVTVTYTASNEDATVTYVDDDKGGAQVGDVVTVTGKTDDSTTYTVTIPGGYEYVGTDG GVVSSDGKTVTITFTADDSDNVVIHLKHGHKDVDPSDPDDPYYNDTHTTANQVIHYVDQD GNTVFDDNDSQTLDYERSVTIDEVTGEITAYGDWKAVDGDEFGSVTSSDKPGYAIDKPVV SGEKPTITNGKDGKVSDVEVTVTYTAMDEDATITYVDDDKGGAQVGDIVTVTGKTDDSTT YTVTIPDGYEYVGTDGGVVSSDGKTVTITFAADDSDNVVIHLKHGHKDVDPSDPDDPYYD ATHATSTQHVHYVDQDGNTVFDDNDSQTLDYERSVTIDEVTGEITAYGDWEAVDDTEFGT VTSPDKPGYTPDTPEVTGEKPEITNGKDGKVNDVEVTVTYTADDEDATITYVDDDKGGAQ VGDIVKVTGKTDDSTTYTVTIPDGYEYVGTDGGVVSSDGKTVTITFAADDSDNVVIHLKH GHKEVDPSDPDDPYYDDTHTTSTEHIHYVDQDGNTVFDDNDSQTLDYERSVTIDEVTGEI TAYGDWKAVDDTEFGSVTSPDKPGYAVDKPEVTGEKPNVTNGKDGKVNDVEVTVTYTASD EDATVTYVDDDKGGAQVGDIVTVTGKTDDSTTYTVTIPDGYEYVGTDGGVVSSDGKTVTI TFTADDSDNVVIHLKHGHKEVDPSDPDDPYYDDTHATVTQTVHYHNGETGGQMQADTTNE VNFDRTVTIDTVTGEITHYGDWEADGDDYFKGFDSPTFDGYFADVQHTGEVKGVDPEQGT VDDVTITYYADDQPVQPDDPKDNGDKVDPSNPNSPVYPAGVTDEDLNKTVTETIHYVDPE TGEQVAPDKTIDVHYSRVGHVIYNTDGTVKEVIYDPWKADGSFTDVDSPVVDGYFPSRSK AGAYTVDDVDSQKDFDTTVYYYKTDQDVTPDDPKDPDTPINPSDPDSPVYPDGVDEDDLN ADVSQVIHYVDENGNELGTYTKDIHYTRTATVHYDQNGNVTGITYGDWKADNGDSFAAVD SPDYDGYFTLDKTVAGKTVDDPQSQADFSDTVIYYKTDQDVTPDDPKDPDTPINPDDPLS PIYPDGVDEDDLNADVSQVIHYVDENGNELGTYTKDIHYTRTATVHYDQNGNATVTYGDW KADNGDSFGAVDSPDYDGYFTLDKTVAGKTVTDPQSQADFSDTVIYYPTSQDVTPDDPKD PDTPINPDDPLSPVYPDGVDEDDLNADVSQVIHYVDDQGNELGTYTKDIHYTRTARITYD QDGNATVTYSDWKADNGDSFGVVNSPDYDGYFTLDKTVAGKTVDDPQSQADFSDTVIYYK TGQDVTPDDPKDPDTPINPDDPLSPVYPDGVDEDDLNADVKETIHYVDENGKELAGTYTK DVHYTRTATVHYDQNGNATVTYGEWKADGSFDKVANPDIDGYFTLDKGVDGKTVTDPQNQ ADFVENVIYYKTDQNVTPDDPKDPDTPINPDDPLSPVYPDGVDEDDLNADVSQVIHYVDE NGNELGTYTKDIHYTRTATVHYDQDGNATVTYSDWKADNGDSFSAVDSPVYDGYFTLDKT VAGETVTDPQSQADFSDTVIYYPTDQDVTPDDPKDPDTPINPADPDSPVYPDGVDDDDLN QDVTETVHYINAETDEEMAATYTHTVHYSRTAHVSYDQDGNATVTYGDWTADGSFDAVTS PEIDGYVADRPVIDGRTVTEPGADFNETVYYYVADHTVTPDNPISPDTPLDPSNPYSPVY PDGVDEGDLNKDVTETIHYVDENGNELADTYTKTVHYTRDAHVHFNADGTTVVTYGEWTA DGSFEAVDSPDIDGYVADQDVIAALDNPTENVDLVVVYHHKQVAPKPEPKPEPKPEPAPT PAPEKPAAPAPKVAPTKTVTPAHVARKAMQQQAPAKRLPQTGEEDNSSMSEVGILGLLAG SLGLFGLGKKRKRDGED
experiment.sample.molecule[0].mw14.384
experiment.sample.molecule[0].total_mw14.384
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name5 mM DTT 100 mM NaCl 10 mM Tris-HCl 0.02 % NaN3
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameMucBP domain of the adhesion protein PEPE_0118 from Pediococcus pentosaceus. Northeast Structural Genomics Consortium target id PtR41A
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressnull
experiment.contributor[0].affiliation[0].full_nameUniversity at Buffalo
experiment.contributor[0].affiliation[0].webpagenull
experiment.contributor[0].contributor_nameTom
experiment.contributor[0].contributor_surnameGrant
experiment.contributor[0].orcidhttps://orcid.org/0000-0002-8583-3700
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2010-02-12
experiment.storage_temperature-80.0
experiment.cell_temperature20.0
experiment.exposure_time1.0
experiment.number_of_frames20
experiment.wavelength0.13
experiment.sample_detector_distance1.5
experiment.concentration_min2.53
experiment.concentration_max7.67
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.188
experiment.s_max3.492
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDCD6_fit1_model1_img.png
fits[0].models[0].softwarePDB (Protein Data Bank)
fits[0].models[0].pdb_link[0].pdb_code3lyy
fits[0].models[0].pdb_link[0].ext_code3LYY
fits[0].models[0].pdb_link[0].ext_typepdb
fits[0].models[0].pdb_link[0].difference_with_modelidentical
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modelatomic
fits[0].models[0].software_version
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fits[0].models[0].bead_radius1.9
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fits[0].models[0].user228
fits[0].fit_unit1/A
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fits[0].softwareCRYSOL
fits[0].chi_square_value6.13
fits[0].p_value0.0
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fits[0].descriptionnull
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fits[1].fit_unit1/A
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fits[1].softwareDAMMIF
fits[1].chi_square_value2.82
fits[1].p_value0.0
fits[1].fit_residual_plotSASDCD6_fit2_fitresiduals_img.png
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fits[1].fit_loghttps://www.sasbdb.org/media/fitting_files/log_files/1561a_5.log
fits[1].software_version
fits[1].descriptionnull
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version4.5a
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitnull
experimental_mw11.09
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw11.09
porod_mw_errornull
pddf_i0250.7
pddf_i0_errornull
guinier_i0249.39
guinier_i0_errornull
pddf_rg2.44
pddf_rg_errornull
guinier_rg2.32
guinier_rg_errornull
pddf_dmax8.2
pddf_dmax_errornull
porod_volume18.41
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_firstnull
guinier_point_lastnull
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDCD6_datloglog_img.png
symmetrynull
last_modified2019-12-06T13:07:15.624532+01:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDCD6
statussuccess
started_at2026-08-11T15:06:47.276121+00:00
finished_at2026-08-11T15:06:55.707792+00:00
source_last_modified2019-12-06T13:07:15.624532+01:00
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查看完整 summary.json 原文
{
  "code": "SASDCD6",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
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    "title": "Small angle X-ray scattering as a complementary tool for high-throughput structural studies.",
    "publication": {
      "title": "Small angle X-ray scattering as a complementary tool for high-throughput structural studies.",
      "author_list": "Grant TD, Luft JR, Wolfley JR, Tsuruta H, Martel A, Montelione GT, Snell EH",
      "journal": "Biopolymers",
      "doi": "10.1002/bip.21630",
      "pmid": "21462184",
      "published_date": "2011 Aug"
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    "status": "released",
    "submitted_date": "2017-07-12",
    "released_date": "2017-07-17"
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查看完整 manifest.json 原文
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  "started_at": "2026-08-11T15:06:47.276121+00:00",
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