查看完整 summary.json 原文
{
"code": "SASDCD7",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "Structural and Biophysical Analysis of the Soluble DHH/DHHA1-Type Phosphodiesterase TM1595 from Thermotoga maritima.",
"publication": {
"title": "Structural and Biophysical Analysis of the Soluble DHH/DHHA1-Type Phosphodiesterase TM1595 from Thermotoga maritima.",
"author_list": "Drexler DJ, Müller M, Rojas-Cordova CA, Bandera AM, Witte G",
"journal": "Structure",
"doi": "10.1016/j.str.2017.10.001",
"pmid": "29107484",
"published_date": "2017 Dec 5"
},
"status": "released",
"submitted_date": "2017-09-01",
"released_date": "2017-10-31"
},
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"experiment": {
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"name": "Pilatus 2M",
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},
"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
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"sample": {
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{
"long_name": "Thermotoga maritima phosphodiesterase (wildtype, TmPDE, TM1595)",
"short_name": "TmPde",
"sequence": "GSGSGMDEIVKVLSQHDRILVVGHIMPDGDCVSSVLSLTLGLEKLGKEVKAAVDYKIPYVFEKFPYIDKIEENPNFDPELLVVVDASSPDRIGKFQDLLDKVPSVVIDHHSTNTNFGNWNWVDPSFAATAQMIFRINKALGVEYDSNLATLNYLGIATDTGFFRHSNADVRVFEDAYKLVKMGADAHFVAKEILENKRFEQFKLFAEVLERLQLLENGKIAYSYIDYDTYLRHNCTDEDSAGFVGELRSIRGVEVAVLFMEFPRGKIHVSMRSKDWFNVNEVAFELGGGGHPRAAGVTFEGKKIEEVIPRVINHLLKKFKEGVESESEKIPEGDVLGG",
"organism": "Thermotoga maritima",
"uniprot_code": "Q9X1T1",
"uniprot_range_first": null,
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"oligomerization": "dimer",
"molecular_type": "protein",
"uniprot_sequence": "MDEIVKVLSQHDRILVVGHIMPDGDCVSSVLSLTLGLEKLGKEVKAAVDYKIPYVFEKFP\nYIDKIEENPNFDPELLVVVDASSPDRIGKFQDLLDKVPSVVIDHHSTNTNFGNWNWVDPS\nFAATAQMIFRINKALGVEYDSNLATLNYLGIATDTGFFRHSNADVRVFEDAYKLVKMGAD\nAHFVAKEILENKRFEQFKLFAEVLERLQLLENGKIAYSYIDYDTYLRHNCTDEDSAGFVG\nELRSIRGVEVAVLFMEFPRGKIHVSMRSKDWFNVNEVAFELGGGGHPRAAGVTFEGKKIE\nEVIPRVINHLLKKFKEGVESESEKIPEGDVLGG",
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"number_molecules": 2,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
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}
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"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "Thermotoga maritima phosphodiesterase TM1595 (wildtype, TmPde)",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
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"absorbption": null,
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"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "Munich, Germany",
"full_name": "Ludwig-Maximilians-Universität München",
"webpage": "https://www.en.uni-muenchen.de"
}
],
"contributor_name": "Gregor",
"contributor_surname": "Witte",
"orcid": "https://orcid.org/0000-0003-0313-0962"
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2015-06-23",
"storage_temperature": null,
"cell_temperature": 20.0,
"exposure_time": 0.045,
"number_of_frames": 34,
"wavelength": 0.123987,
"sample_detector_distance": 3.0,
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"software": "PDB (Protein Data Bank)",
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{
"pdb_code": "5o25",
"ext_code": "5O25",
"ext_type": "pdb",
"difference_with_model": "identical"
}
],
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"symmetry": "",
"comment": "PDB not yet released",
"user": 229
}
],
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"description": null,
"experiment_description": "Synchrotron SAXS data from solutions of Thermotoga maritima phosphodiesterase TM1595 (wildtype, TmPde) in 20mM Tris, 200 mM NaCl, 5%(v/v) glycerol, pH 7.5, were collected on the EMBL-P12 beam line on the PETRA III storage ring (Hamburg, Germany) using a Pilatus 2M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.123987 nm (I(s) vs s, where s = 4π sin θ/λ and 2θ is the scattering angle). One solute concentration of 7.00 mg/ml was measured at 20°C. 34 successive 0.045 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted and the different curves were scaled for protein concentration.",
"tags": [],
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"experimental_mw": 67.0,
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"guinier_i0_mw": null,
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"porod_mw": 64.0,
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"pddf_dmax": 7.76,
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"porod_volume": 105.9,
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"estimated_volume": null,
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"guinier_point_first": 1,
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"pddf_point_first": null,
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"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDCD7_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-06-21T07:56:39.492710+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
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"started_at": "2026-08-11T15:27:13.891920+00:00",
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