查看完整 summary.json 原文
{
"code": "SASDCD8",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "WAXS benchmark on standard proteins",
"publication": null,
"status": "released",
"submitted_date": "2017-10-17",
"released_date": "2021-09-13"
},
"pddf_data": null,
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDCD8.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCD8_dat_img.png",
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"name": "Pilatus 2M",
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"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
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},
"sample": {
"molecule": [
{
"long_name": "Horse spleen apoferritin",
"short_name": "Apoferritin",
"sequence": "SSQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKMQNQRGGRALFQD\r\nLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAG\r\nLGEYLFERLTLKHD",
"organism": "Equus caballus",
"uniprot_code": "P02791",
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "24-mer",
"molecular_type": "protein",
"uniprot_sequence": "MSSQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKR\nEGAERLLKMQNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSA\nQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFERLTLKHD",
"mw": 19.846,
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"number_molecules": 24,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
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}
],
"buffer": {
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"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "Horse spleen apoferritin (WAXS)",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "EMBL-Hamburg",
"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
"full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
"webpage": "http://www.embl-hamburg.de/index.php"
}
],
"contributor_name": "Maxim",
"contributor_surname": "Petoukhov",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2015-07-15",
"storage_temperature": 10.0,
"cell_temperature": 20.0,
"exposure_time": 0.095,
"number_of_frames": 40,
"wavelength": 0.062,
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"concentration_min": null,
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"software": "PDB (Protein Data Bank)",
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"ext_code": "1IER",
"ext_type": "pdb",
"difference_with_model": "identical"
}
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"model_title": null,
"type_of_model": "atomic",
"software_version": "CRYSOL 3.0",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDCD8_fit1_model1.pdb",
"model_mw": 476.1,
"bead_radius": null,
"log": null,
"symmetry": "",
"comment": "",
"user": 102
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDCD8_fit1_fixed_fit_img.png",
"software": "CRYSOL",
"chi_square_value": 274.778,
"p_value": 0.0,
"fit_residual_plot": "SASDCD8_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDCD8_fit1.fit",
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"description": null
}
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"i0_calibration_standard": null,
"description": null,
"experiment_description": "Synchrotron SAXS data from solutions of Horse spleen apoferritin in tbs, pH 7.5 were collected on the EMBL-P12 beam line at the PETRA III storage ring (Hamburg, Germany), using a Pilatus 2M detector at a sample-detector distance of 1.5 m and at a wavelength of λ = 0.062 nm (I(s) vs s, where s = 4πsinθ/λ and 2θ is the scattering angle). A solute concentration of 15.8 mg/ml was measured at 20°C. 40 successive 0.095 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted and the data scaled for protein concentration.",
"tags": [
"benchmark"
],
"intensity_unit": "arbitrary",
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"pddf_dmax": null,
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"estimated_volume": null,
"estimated_volume_error": null,
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"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDCD8_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-06-21T07:56:39.492710+02:00",
"bragg_peak": []
}
查看完整 manifest.json 原文
{
"code": "SASDCD8",
"status": "success",
"started_at": "2026-08-11T15:50:54.046004+00:00",
"finished_at": "2026-08-11T15:51:04.683894+00:00",
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