SASDCU3

Proline utilization A from Bradyrhizobium diazoefficiens (formerly Bradyrhizobium japonicum) 7.0 mg/mL

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2026-05-18T10:07:06.737546+02:00
▼

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Proline utilization A from Bradyrhizobium diazoefficiens (formerly Bradyrhizobium japonicum) 7.0 mg/mL

浓度— – 7.0 缓冲液 / pH50 mM Tris (pH 7.8), 50 mM NaCl, 0.5 mM Tris(2-carboxyethyl)phosphine, and 5% (v/v) glycerol / 7.8
实验温度— 设备 / 束线Advanced Light Source (ALS) / 12.3.1 (SIBYLS)
波长— nm曝光— s × —

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Proline dehydrogenase
查看序列
GHMPNIPPPFTAPYAPDDAEIAARLLPASHLSPPQEARIHRTATRLIEAIRKRDDRLGGVEDMLREFALSTKEGLALMVLAEALLRVPDARTADQFIEDKLGEGDFIHHETKSTAFLVNASAWALGLSARVIQPGETPDGTIGRLVKRLGAPAVRTATRQAMRLMGNHFVLGETIEQALERGKPRSGQKTRYSFDMLGEGARTAADARRYFDAYASAIETIGKAAGNHALPDRPGISVKLSALHPRFEAISRARVMVELVPQLLDLAQRAKAHDLNFTVDAEEADRLELSLDVIAATLADPSLKGWDGFGLAIQAYQKRASAVIDYVDALARAHDRKLMVRLVKGAYWDTEIKRAQERGLDGYPVFTRKAMTDLNYVACASKLLALRPRIFPQFATHNALTVATVLEMAEGSSGFEFQRLHGMGEALYEQLAKDHADIAYRTYAPVGSHRDLLAYLVRRLLENGANSSFVAQAADYRVPVPALLQRPADAIVRPQAAAHPRIPLPCDLFAPERRNSRGVEFGARTALDQLLTDVKAETGDLKPIADATPDQAHAAVAAARAGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTLDDALSELREAADFCRYYAAQGRKLFGSETAMPGPTGESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREAVALLHEAGIPKSALYLVTGDGRIGAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIADATALPEQVADDVVTSAFRSAGQRCSALRLLFVQEDVADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHIARMKTEARLHFAGPAPEGCFVAPHIFELTEAGQLTEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIEAIIDRVQVGNIYVNRNMIGAVVGVQPFGGNGLSGTGPKAGGPHYLARFATEQTVTINTAAAGGNAALLAGEE
proteinBradyrhizobium diazoefficiensQ89E26—–—tetramer分子数 4107.558 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1513[3]0.013075–0.324398 1/A含误差列缺失 00sasbdb/entries/u3/sasdcu3/source/SASDCU3.dat
▼

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)13.7—Å
i0Guinier607.37.38—
i0P(r)612.70.7—
mwExperimental429.0—kDa
porod_volumePorod560.0—ų
rgGuinier5.190.07Å
rgP(r)5.150.02Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

▼

3. 来源拟合与模型 Source Fits & Models

▶

4. 来源文件索引 Source Files

▶

5. 实验说明与论文 Experiment & Publication

▼

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称50 mM Tris (pH 7.8), 50 mM NaCl, 0.5 mM Tris(2-carboxyethyl)phosphine, and 5% (v/v) glycerol缓冲液浓度—
pH7.8添加剂—
缓冲液说明BjPutA buffer
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2016-12-12储存 / 测量温度— / —
曝光时间—帧数—
波长—样品-探测器距离—
光源X-ray synchrotron探测器Pilatus3 X 2M
机构 / 束线Advanced Light Source (ALS) / 12.3.1 (SIBYLS) · Berkeley, CA, USA
q 范围0.131 – 3.244样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
curvesasbdb/entries/u3/sasdcu3/source/SASDCU3.datdownloaded2308500c49dcd7dc6086e3c3bdfffba5a3e95c1f7b7745f123bbe305aba95c7dac8f4下载查看原文件源站
full_entry_zipsasbdb/entries/u3/sasdcu3/source/SASDCU3.zipdownloaded13891470a5af1ac8c38b418ede03878b2dbd6e7ccec0b814aa7d703f710142d6576a54下载查看原文件源站
pddfsasbdb/entries/u3/sasdcu3/source/SASDCU3.outdownloaded47534cc4e75e3e2174d765480ebdd4111712a0e1414509f0b5a1779cae0241d984b70下载查看原文件源站
sascifsasbdb/entries/u3/sasdcu3/source/SASDCU3.sascifdownloaded7538411db19f6335bf436e87f7e9dc9f3210e7bc943c8efdae172072c1f15c6ef0a0e4下载查看原文件源站
summarysasbdb/entries/u3/sasdcu3/source/summary.jsondownloaded9543137a2594c846a578fb6c5a938e190863e39eb5b350130e50728c7feab584befb下载查看原文件源站
curve:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/u3/sasdcu3/source/SASDCU3.dat",
  "role": "curve",
  "sha256": "00c49dcd7dc6086e3c3bdfffba5a3e95c1f7b7745f123bbe305aba95c7dac8f4",
  "size": 23085,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/intensities_files/SASDCU3.dat"
}
full_entry_zip:来源记录与 ZIP 内部目录(5 项)
{
  "path": "/data/saxsdb/sasbdb/entries/u3/sasdcu3/source/SASDCU3.zip",
  "role": "full_entry_zip",
  "sha256": "70a5af1ac8c38b418ede03878b2dbd6e7ccec0b814aa7d703f710142d6576a54",
  "size": 138914,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/zip_directories/SASDCU3.zip",
  "zip_member_count": 5,
  "zip_members": [
    {
      "crc32": "71505080",
      "name": "SASDCU3/experimental_data/SASDCU3.dat",
      "size": 23085
    },
    {
      "crc32": "a5a72f5e",
      "name": "SASDCU3/pddf/SASDCU3.out",
      "size": 47534
    },
    {
      "crc32": "d9435370",
      "name": "SASDCU3/SASDCU3_fit1.fir",
      "size": 29183
    },
    {
      "crc32": "325d5e93",
      "name": "SASDCU3/SASDCU3_fit1_model1.pdb",
      "size": 393141
    },
    {
      "crc32": "16729877",
      "name": "SASDCU3/SASDCU3_fit1_model2.pdb",
      "size": 125816
    }
  ],
  "zip_validation": "central_directory_readable"
}
pddf:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/u3/sasdcu3/source/SASDCU3.out",
  "role": "pddf",
  "sha256": "cc4e75e3e2174d765480ebdd4111712a0e1414509f0b5a1779cae0241d984b70",
  "size": 47534,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/p_of_R_files/SASDCU3.out"
}
sascif:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/u3/sasdcu3/source/SASDCU3.sascif",
  "role": "sascif",
  "sha256": "1db19f6335bf436e87f7e9dc9f3210e7bc943c8efdae172072c1f15c6ef0a0e4",
  "size": 753841,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDCU3.sascif"
}
summary:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/u3/sasdcu3/source/summary.json",
  "sha256": "137a2594c846a578fb6c5a938e190863e39eb5b350130e50728c7feab584befb",
  "size": 9543,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDCU3/"
}

全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:169 个字段值
字段路径原始值
codeSASDCU3
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleBiophysical investigation of type A PutAs reveals a conserved core oligomeric structure.
project.publication.titleBiophysical investigation of type A PutAs reveals a conserved core oligomeric structure.
project.publication.author_listKorasick DA, Singh H, Pemberton TA, Luo M, Dhatwalia R, Tanner JJ
project.publication.journalFEBS J
project.publication.doi10.1111/febs.14165
project.publication.pmid28710792
project.publication.published_date2017 Sep
project.statusreleased
project.submitted_date2017-05-19
project.released_date2017-07-17
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDCU3.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDCU3.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCU3_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCU3_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDCU3_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCU3_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDCU3.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus3 X 2M
experiment.instrument.detector.resolution172.0
experiment.instrument.nameAdvanced Light Source (ALS)
experiment.instrument.cityBerkeley, CA
experiment.instrument.countryUSA
experiment.instrument.beamline_name12.3.1 (SIBYLS)
experiment.instrument.beam_geometry
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameProline dehydrogenase
experiment.sample.molecule[0].short_nameBjPutA wild-type
experiment.sample.molecule[0].sequenceGHMPNIPPPFTAPYAPDDAEIAARLLPASHLSPPQEARIHRTATRLIEAIRKRDDRLGGVEDMLREFALSTKEGLALMVL AEALLRVPDARTADQFIEDKLGEGDFIHHETKSTAFLVNASAWALGLSARVIQPGETPDGTIGRLVKRLGAPAVRTATRQ AMRLMGNHFVLGETIEQALERGKPRSGQKTRYSFDMLGEGARTAADARRYFDAYASAIETIGKAAGNHALPDRPGISVKL SALHPRFEAISRARVMVELVPQLLDLAQRAKAHDLNFTVDAEEADRLELSLDVIAATLADPSLKGWDGFGLAIQAYQKRA SAVIDYVDALARAHDRKLMVRLVKGAYWDTEIKRAQERGLDGYPVFTRKAMTDLNYVACASKLLALRPRIFPQFATHNAL TVATVLEMAEGSSGFEFQRLHGMGEALYEQLAKDHADIAYRTYAPVGSHRDLLAYLVRRLLENGANSSFVAQAADYRVPV PALLQRPADAIVRPQAAAHPRIPLPCDLFAPERRNSRGVEFGARTALDQLLTDVKAETGDLKPIADATPDQAHAAVAAAR AGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTLDDALSELREAADFCRYYAAQGRKLFGSETAMPGPTG ESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREAVALLHEAGIPKSALYLVTGDGRIGA ALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIADATALPEQVADDVVTSAFRSAGQRCSALRLL FVQEDVADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHIARMKTEARLHFAGPAPEGCFVAPHIFELTEA GQLTEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIEAIIDRVQVGNIYVNRNMIGAVVGVQPFGGNG LSGTGPKAGGPHYLARFATEQTVTINTAAAGGNAALLAGEE
experiment.sample.molecule[0].organismBradyrhizobium diazoefficiens
experiment.sample.molecule[0].uniprot_codeQ89E26
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationtetramer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMPNIPPPFTAPYAPDDAEIAARLLPASHLSPPQEARIHRTATRLIEAIRKRDDRLGGVED MLREFALSTKEGLALMVLAEALLRVPDARTADQFIEDKLGEGDFIHHETKSTAFLVNASA WALGLSARVIQPGETPDGTIGRLVKRLGAPAVRTATRQAMRLMGNHFVLGETIEQALERG KPRSGQKTRYSFDMLGEGARTAADARRYFDAYASAIETIGKAAGNHALPDRPGISVKLSA LHPRFEAISRARVMVELVPQLLDLAQRAKAHDLNFTVDAEEADRLELSLDVIAATLADPS LKGWDGFGLAIQAYQKRASAVIDYVDALARAHDRKLMVRLVKGAYWDTEIKRAQERGLDG YPVFTRKAMTDLNYVACASKLLALRPRIFPQFATHNALTVATVLEMAEGSSGFEFQRLHG MGEALYEQLAKDHADIAYRTYAPVGSHRDLLAYLVRRLLENGANSSFVAQAADYRVPVPA LLQRPADAIVRPQAAAHPRIPLPCDLFAPERRNSRGVEFGARTALDQLLTDVKAETGDLK PIADATPDQAHAAVAAARAGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGK TLDDALSELREAADFCRYYAAQGRKLFGSETAMPGPTGESNALTMRGRGVFVAISPWNFP LAIFLGQVTAALMAGNSVVAKPAEQTPRIAREAVALLHEAGIPKSALYLVTGDGRIGAAL TAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIADATALPEQVADDV VTSAFRSAGQRCSALRLLFVQEDVADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAK QRLDAHIARMKTEARLHFAGPAPEGCFVAPHIFELTEAGQLTEEVFGPILHVVRYRPENL ERVLRAIERTGYGLTLGVHSRIDDSIEAIIDRVQVGNIYVNRNMIGAVVGVQPFGGNGLS GTGPKAGGPHYLARFATEQTVTINTAAAGGNAALLAGEE
experiment.sample.molecule[0].mw107.558
experiment.sample.molecule[0].total_mw430.232
experiment.sample.molecule[0].number_molecules4
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name50 mM Tris (pH 7.8), 50 mM NaCl, 0.5 mM Tris(2-carboxyethyl)phosphine, and 5% (v/v) glycerol
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentBjPutA buffer
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.8
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameProline utilization A from Bradyrhizobium diazoefficiens (formerly Bradyrhizobium japonicum) 7.0 mg/mL
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameMizzou
experiment.contributor[0].affiliation[0].addressColumbia, MO, USA
experiment.contributor[0].affiliation[0].full_nameUniversity of Missouri-Columbia
experiment.contributor[0].affiliation[0].webpagehttp://missouri.edu/
experiment.contributor[0].contributor_nameJohn
experiment.contributor[0].contributor_surnameTanner
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2016-12-12
experiment.storage_temperaturenull
experiment.cell_temperaturenull
experiment.exposure_timenull
experiment.number_of_framesnull
experiment.wavelengthnull
experiment.sample_detector_distancenull
experiment.concentration_minnull
experiment.concentration_max7.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.131
experiment.s_max3.244
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDCU3_fit1_model1_img.png
fits[0].models[0].softwareDAMMIF
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modeldummy
fits[0].models[0].software_version
fits[0].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDCU3_fit1_model1.pdb
fits[0].models[0].model_mw360.0
fits[0].models[0].bead_radius2.9
fits[0].models[0].lognull
fits[0].models[0].symmetryP222
fits[0].models[0].comment
fits[0].models[0].user166
fits[0].models[1].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDCU3_fit1_model2_img.png
fits[0].models[1].softwareDAMFILT
fits[0].models[1].pdb_link[]
fits[0].models[1].model_titlenull
fits[0].models[1].type_of_modeldummy
fits[0].models[1].software_version5.0 r6293
fits[0].models[1].model_datahttps://www.sasbdb.org/media/pdb_file/SASDCU3_fit1_model2.pdb
fits[0].models[1].model_mw358.708
fits[0].models[1].bead_radius4.25
fits[0].models[1].lognull
fits[0].models[1].symmetry
fits[0].models[1].comment
fits[0].models[1].user166
fits[0].fit_unit1/A
fits[0].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDCU3_fit1_fixed_fit_img.png
fits[0].softwareDAMMIF
fits[0].chi_square_value2.795
fits[0].p_value0.0
fits[0].fit_residual_plotSASDCU3_fit1_fitresiduals_img.png
fits[0].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDCU3_fit1.fir
fits[0].fit_lognull
fits[0].software_version
fits[0].descriptionnull
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionnull
i0_calibration_standardnull
descriptionnull
experiment_descriptionSynchrotron SAXS data from a solution of Proline utilization A from Bradyrhizobium diazoefficiens (formerly Bradyrhizobium japonicum) in 50 mM Tris (pH 7.8), 50 mM NaCl, 0.5 mM Tris(2-carboxyethyl)phosphine, and 5% (v/v) glycerol, pH 7.8 were collected on the 12.3.1 (SIBYLS) beam line at the Advanced Light Source (ALS; Berkeley, CA, USA) using a Pilatus3 X 2M detector. One solute concentration of 7 mg/ml was measured. The data were normalized to the intensity of the transmitted beam and radially averaged. The radially averaged scattering of the solvent-blank was subtracted.
tags[]
intensity_unitnull
experimental_mw429.0
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mwnull
porod_mw_errornull
pddf_i0612.7
pddf_i0_error0.7
guinier_i0607.3
guinier_i0_error7.38
pddf_rg5.15
pddf_rg_error0.02
guinier_rg5.19
guinier_rg_error0.07
pddf_dmax13.7
pddf_dmax_errornull
porod_volume560.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first2
guinier_point_last20
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDCU3_datloglog_img.png
symmetrynull
last_modified2026-05-18T10:07:06.737546+02:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDCU3
statussuccess
started_at2026-08-11T14:07:39.143985+00:00
finished_at2026-08-11T14:07:52.369250+00:00
source_last_modified2026-05-18T10:07:06.737546+02:00
files[0].statusdownloaded
files[0].urlhttps://www.sasbdb.org/rest-api/entry/summary/SASDCU3/
files[0].path/data/saxsdb/sasbdb/entries/u3/sasdcu3/source/summary.json
files[0].size9543
files[0].sha256137a2594c846a578fb6c5a938e190863e39eb5b350130e50728c7feab584befb
files[1].statusdownloaded
files[1].urlhttps://www.sasbdb.org/media/intensities_files/SASDCU3.dat
files[1].path/data/saxsdb/sasbdb/entries/u3/sasdcu3/source/SASDCU3.dat
files[1].size23085
files[1].sha25600c49dcd7dc6086e3c3bdfffba5a3e95c1f7b7745f123bbe305aba95c7dac8f4
files[1].rolecurve
files[2].statusdownloaded
files[2].urlhttps://www.sasbdb.org/media/p_of_R_files/SASDCU3.out
files[2].path/data/saxsdb/sasbdb/entries/u3/sasdcu3/source/SASDCU3.out
files[2].size47534
files[2].sha256cc4e75e3e2174d765480ebdd4111712a0e1414509f0b5a1779cae0241d984b70
files[2].rolepddf
files[3].statusdownloaded
files[3].urlhttps://www.sasbdb.org/media/sascif/sascif_files/SASDCU3.sascif
files[3].path/data/saxsdb/sasbdb/entries/u3/sasdcu3/source/SASDCU3.sascif
files[3].size753841
files[3].sha2561db19f6335bf436e87f7e9dc9f3210e7bc943c8efdae172072c1f15c6ef0a0e4
files[3].rolesascif
files[4].statusdownloaded
files[4].urlhttps://www.sasbdb.org/media/zip_directories/SASDCU3.zip
files[4].path/data/saxsdb/sasbdb/entries/u3/sasdcu3/source/SASDCU3.zip
files[4].size138914
files[4].sha25670a5af1ac8c38b418ede03878b2dbd6e7ccec0b814aa7d703f710142d6576a54
files[4].rolefull_entry_zip
files[4].zip_member_count5
files[4].zip_validationcentral_directory_readable
查看完整 summary.json 原文
{
  "code": "SASDCU3",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "Biophysical investigation of type A PutAs reveals a conserved core oligomeric structure.",
    "publication": {
      "title": "Biophysical investigation of type A PutAs reveals a conserved core oligomeric structure.",
      "author_list": "Korasick DA, Singh H, Pemberton TA, Luo M, Dhatwalia R, Tanner JJ",
      "journal": "FEBS J",
      "doi": "10.1111/febs.14165",
      "pmid": "28710792",
      "published_date": "2017 Sep"
    },
    "status": "released",
    "submitted_date": "2017-05-19",
    "released_date": "2017-07-17"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDCU3.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDCU3.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCU3_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCU3_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDCU3_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCU3_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDCU3.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Pilatus3 X 2M",
        "resolution": 172.0
      },
      "name": "Advanced Light Source (ALS)",
      "city": "Berkeley, CA",
      "country": "USA",
      "beamline_name": "12.3.1 (SIBYLS)",
      "beam_geometry": "",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Proline dehydrogenase",
          "short_name": "BjPutA wild-type",
          "sequence": "GHMPNIPPPFTAPYAPDDAEIAARLLPASHLSPPQEARIHRTATRLIEAIRKRDDRLGGVEDMLREFALSTKEGLALMVL\r\nAEALLRVPDARTADQFIEDKLGEGDFIHHETKSTAFLVNASAWALGLSARVIQPGETPDGTIGRLVKRLGAPAVRTATRQ\r\nAMRLMGNHFVLGETIEQALERGKPRSGQKTRYSFDMLGEGARTAADARRYFDAYASAIETIGKAAGNHALPDRPGISVKL\r\nSALHPRFEAISRARVMVELVPQLLDLAQRAKAHDLNFTVDAEEADRLELSLDVIAATLADPSLKGWDGFGLAIQAYQKRA\r\nSAVIDYVDALARAHDRKLMVRLVKGAYWDTEIKRAQERGLDGYPVFTRKAMTDLNYVACASKLLALRPRIFPQFATHNAL\r\nTVATVLEMAEGSSGFEFQRLHGMGEALYEQLAKDHADIAYRTYAPVGSHRDLLAYLVRRLLENGANSSFVAQAADYRVPV\r\nPALLQRPADAIVRPQAAAHPRIPLPCDLFAPERRNSRGVEFGARTALDQLLTDVKAETGDLKPIADATPDQAHAAVAAAR\r\nAGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTLDDALSELREAADFCRYYAAQGRKLFGSETAMPGPTG\r\nESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREAVALLHEAGIPKSALYLVTGDGRIGA\r\nALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIADATALPEQVADDVVTSAFRSAGQRCSALRLL\r\nFVQEDVADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHIARMKTEARLHFAGPAPEGCFVAPHIFELTEA\r\nGQLTEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIEAIIDRVQVGNIYVNRNMIGAVVGVQPFGGNG\r\nLSGTGPKAGGPHYLARFATEQTVTINTAAAGGNAALLAGEE",
          "organism": "Bradyrhizobium diazoefficiens",
          "uniprot_code": "Q89E26",
          "uniprot_range_first": null,
          "uniprot_range_last": null,
          "oligomerization": "tetramer",
          "molecular_type": "protein",
          "uniprot_sequence": "MPNIPPPFTAPYAPDDAEIAARLLPASHLSPPQEARIHRTATRLIEAIRKRDDRLGGVED\nMLREFALSTKEGLALMVLAEALLRVPDARTADQFIEDKLGEGDFIHHETKSTAFLVNASA\nWALGLSARVIQPGETPDGTIGRLVKRLGAPAVRTATRQAMRLMGNHFVLGETIEQALERG\nKPRSGQKTRYSFDMLGEGARTAADARRYFDAYASAIETIGKAAGNHALPDRPGISVKLSA\nLHPRFEAISRARVMVELVPQLLDLAQRAKAHDLNFTVDAEEADRLELSLDVIAATLADPS\nLKGWDGFGLAIQAYQKRASAVIDYVDALARAHDRKLMVRLVKGAYWDTEIKRAQERGLDG\nYPVFTRKAMTDLNYVACASKLLALRPRIFPQFATHNALTVATVLEMAEGSSGFEFQRLHG\nMGEALYEQLAKDHADIAYRTYAPVGSHRDLLAYLVRRLLENGANSSFVAQAADYRVPVPA\nLLQRPADAIVRPQAAAHPRIPLPCDLFAPERRNSRGVEFGARTALDQLLTDVKAETGDLK\nPIADATPDQAHAAVAAARAGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGK\nTLDDALSELREAADFCRYYAAQGRKLFGSETAMPGPTGESNALTMRGRGVFVAISPWNFP\nLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREAVALLHEAGIPKSALYLVTGDGRIGAAL\nTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIADATALPEQVADDV\nVTSAFRSAGQRCSALRLLFVQEDVADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAK\nQRLDAHIARMKTEARLHFAGPAPEGCFVAPHIFELTEAGQLTEEVFGPILHVVRYRPENL\nERVLRAIERTGYGLTLGVHSRIDDSIEAIIDRVQVGNIYVNRNMIGAVVGVQPFGGNGLS\nGTGPKAGGPHYLARFATEQTVTINTAAAGGNAALLAGEE",
          "mw": 107.558,
          "total_mw": 430.232,
          "number_molecules": 4,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        }
      ],
      "buffer": {
        "name": "50 mM Tris (pH 7.8), 50 mM NaCl, 0.5 mM Tris(2-carboxyethyl)phosphine, and 5% (v/v) glycerol",
        "concentration_unit": null,
        "comment": "BjPutA buffer",
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.8,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Proline utilization A from Bradyrhizobium diazoefficiens (formerly Bradyrhizobium japonicum) 7.0 mg/mL",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": "Mizzou",
            "address": "Columbia, MO, USA",
            "full_name": "University of Missouri-Columbia",
            "webpage": "http://missouri.edu/"
          }
        ],
        "contributor_name": "John",
        "contributor_surname": "Tanner",
        "orcid": null
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2016-12-12",
    "storage_temperature": null,
    "cell_temperature": null,
    "exposure_time": null,
    "number_of_frames": null,
    "wavelength": null,
    "sample_detector_distance": null,
    "concentration_min": null,
    "concentration_max": 7.0,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.131,
    "s_max": 3.244,
    "total_exposure_time": null,
    "seccolumn": null
  },
  "fits": [
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDCU3_fit1_model1_img.png",
          "software": "DAMMIF",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "dummy",
          "software_version": "",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDCU3_fit1_model1.pdb",
          "model_mw": 360.0,
          "bead_radius": 2.9,
          "log": null,
          "symmetry": "P222",
          "comment": "",
          "user": 166
        },
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDCU3_fit1_model2_img.png",
          "software": "DAMFILT",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "dummy",
          "software_version": "5.0 r6293",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDCU3_fit1_model2.pdb",
          "model_mw": 358.708,
          "bead_radius": 4.25,
          "log": null,
          "symmetry": "",
          "comment": "",
          "user": 166
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDCU3_fit1_fixed_fit_img.png",
      "software": "DAMMIF",
      "chi_square_value": 2.795,
      "p_value": 0.0,
      "fit_residual_plot": "SASDCU3_fit1_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDCU3_fit1.fir",
      "fit_log": null,
      "software_version": "",
      "description": null
    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": null,
  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": "Synchrotron SAXS data from a solution of Proline utilization A from Bradyrhizobium diazoefficiens (formerly Bradyrhizobium japonicum) in 50 mM Tris (pH 7.8), 50 mM NaCl, 0.5 mM Tris(2-carboxyethyl)phosphine, and 5% (v/v) glycerol, pH 7.8 were collected on the 12.3.1 (SIBYLS) beam line at the Advanced Light Source (ALS; Berkeley, CA, USA) using a Pilatus3 X 2M detector. One solute concentration of 7 mg/ml was measured. The data were normalized to the intensity of the transmitted beam and radially averaged. The  radially averaged scattering of the solvent-blank was subtracted.",
  "tags": [],
  "intensity_unit": null,
  "experimental_mw": 429.0,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": null,
  "porod_mw_error": null,
  "pddf_i0": 612.7,
  "pddf_i0_error": 0.7,
  "guinier_i0": 607.3,
  "guinier_i0_error": 7.38,
  "pddf_rg": 5.15,
  "pddf_rg_error": 0.02,
  "guinier_rg": 5.19,
  "guinier_rg_error": 0.07,
  "pddf_dmax": 13.7,
  "pddf_dmax_error": null,
  "porod_volume": 560.0,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 2,
  "guinier_point_last": 20,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDCU3_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2026-05-18T10:07:06.737546+02:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
{
  "code": "SASDCU3",
  "status": "success",
  "started_at": "2026-08-11T14:07:39.143985+00:00",
  "finished_at": "2026-08-11T14:07:52.369250+00:00",
  "source_last_modified": "2026-05-18T10:07:06.737546+02:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDCU3/",
      "path": "/data/saxsdb/sasbdb/entries/u3/sasdcu3/source/summary.json",
      "size": 9543,
      "sha256": "137a2594c846a578fb6c5a938e190863e39eb5b350130e50728c7feab584befb"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDCU3.dat",
      "path": "/data/saxsdb/sasbdb/entries/u3/sasdcu3/source/SASDCU3.dat",
      "size": 23085,
      "sha256": "00c49dcd7dc6086e3c3bdfffba5a3e95c1f7b7745f123bbe305aba95c7dac8f4",
      "role": "curve"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/p_of_R_files/SASDCU3.out",
      "path": "/data/saxsdb/sasbdb/entries/u3/sasdcu3/source/SASDCU3.out",
      "size": 47534,
      "sha256": "cc4e75e3e2174d765480ebdd4111712a0e1414509f0b5a1779cae0241d984b70",
      "role": "pddf"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDCU3.sascif",
      "path": "/data/saxsdb/sasbdb/entries/u3/sasdcu3/source/SASDCU3.sascif",
      "size": 753841,
      "sha256": "1db19f6335bf436e87f7e9dc9f3210e7bc943c8efdae172072c1f15c6ef0a0e4",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDCU3.zip",
      "path": "/data/saxsdb/sasbdb/entries/u3/sasdcu3/source/SASDCU3.zip",
      "size": 138914,
      "sha256": "70a5af1ac8c38b418ede03878b2dbd6e7ccec0b814aa7d703f710142d6576a54",
      "role": "full_entry_zip",
      "zip_member_count": 5,
      "zip_validation": "central_directory_readable"
    }
  ]
}