查看完整 summary.json 原文
{
"code": "SASDCW3",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "Biophysical investigation of type A PutAs reveals a conserved core oligomeric structure.",
"publication": {
"title": "Biophysical investigation of type A PutAs reveals a conserved core oligomeric structure.",
"author_list": "Korasick DA, Singh H, Pemberton TA, Luo M, Dhatwalia R, Tanner JJ",
"journal": "FEBS J",
"doi": "10.1111/febs.14165",
"pmid": "28710792",
"published_date": "2017 Sep"
},
"status": "released",
"submitted_date": "2017-05-19",
"released_date": "2017-07-17"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDCW3.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDCW3.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCW3_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCW3_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDCW3_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDCW3_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDCW3.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "MAR 165 CCD",
"resolution": null
},
"name": "Advanced Light Source (ALS)",
"city": "Berkeley, CA",
"country": "USA",
"beamline_name": "12.3.1 (SIBYLS)",
"beam_geometry": "",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Bifunctional protein PutA",
"short_name": "LpPutA",
"sequence": "HHHHHHGKPIPNPLLGLDSTENLYFQG\r\nMLEKQSIHLPEGLRAAINKAYRMDELSLITELSEQAALDPQQMMAIKTSATKLVQSVRSERKKSTGIDSF\r\nLTEYALSSDEGIALMCLAEALLRVPDNATIDNLIKDKLAGGDWGAHRGQSESFFVNATTWALMLTGKVLT\r\nPEKAENTLTKALLKLVNRSSEAVVRKAVDKAMRIMSKQFVMGRTINEALARAKKKEDRGYRYSYDMLGEA\r\nALTSADAARYFEAYKEAIISIGEKADKHSDVYRRPGISIKLSALHPRYSEFQYERVMAELPPKLLALSRL\r\nAKDYGIALTIDAEESERLDLSLDVIEKVFTDESLQGWNGFGLAVQSYQKRAFYVLDWVAALARSKQRRIM\r\nVRLIKGAYWDSEIKKTQMQGFSEYPVFTRKVFTDVSFQACAKKILTMTDAIYPQFATHNAYSVAMILNLV\r\nGGYRDFEFQCLHGMGNELYEQIVPANCYGIPCRIYAPVGSHEDLLPYLVRRLLENGANSSFVNRIVDDKA\r\nPISELVEDPVAKSRSLLDKINKNIPLPEDIFLPVRKNSKGFDFTNRLERALLQQELAKIESKEWQASPMI\r\nAGRKLSRDLLQTVMSPQQPAYAIGSVQQATLDDVEVALNQAKLAFELWSKKPVEERASCLNRFADLLQAN\r\nMAELMVLTCREAGKTWSDGIAEVREAIDFCRYYAKKAQELMSSPQRFNGYTGELNELSLHPRGTILCISP\r\nWNFPLAIFTGQVVAGLVTGNCVIAKPAEQTPLIAAYAVKLMHQAGIPEGVIQLIPGAGETIGAALVADKR\r\nIKAVLFTGSTDTANLINRTLATRGGEIIPLIAETGGQNAMIVDSSALLEQVVVDAVTSAFGSAGQRCSAL\r\nRVLYVQEEVYPRTVELLKGAMAELVVGDPQWLSTDVGPVIDKEALSILKNHVENMRKHHEILYQCTVDDE\r\nALSGYFMPPTAIAIDSISALEKEVFGPILHVIQFKRKDLDKVINQINQTSYGLTLGIHSRINETVDYIRQ\r\nRVHAGNCYVNRNMIGAVVGLQPFGGEGLSGTGPKAGGPNYLIRLCHERTYTVDTTAAGGNASLMSIPEEG",
"organism": "Legionella pneumophila subsp. pneumophila",
"uniprot_code": "Q5ZUU6",
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "dimer",
"molecular_type": "protein",
"uniprot_sequence": "MENIMLEKQSIHLPEGLRAAINKAYRMDELSLITELSEQAALDPQQMMAIKTSATKLVQS\nVRSERKKSTGIDSFLTEYALSSDEGIALMCLAEALLRVPDNATIDNLIKDKLAGGDWGAH\nRGQSESFFVNATTWALMLTGKVLTPEKAENTLTKALLKLVNRSSEAVVRKAVDKAMRIMS\nKQFVMGRTINEALARAKKKEDRGYRYSYDMLGEAALTSADAARYFEAYKEAIISIGEKAD\nKHSDVYRRPGISIKLSALHPRYSEFQYERVMAELPPKLLALSRLAKDYGIALTIDAEESE\nRLDLSLDVIEKVFTDESLQGWNGFGLAVQSYQKRAFYVLDWVAALARSKQRRIMVRLIKG\nAYWDSEIKKTQMQGFSEYPVFTRKVFTDVSFQACAKKILTMTDAIYPQFATHNAYSVAMI\nLNLVGGYRDFEFQCLHGMGNELYEQIVPANCYGIPCRIYAPVGSHEDLLPYLVRRLLENG\nANSSFVNRIVDDKAPISELVEDPVAKSRSLLDKINKNIPLPEDIFLPVRKNSKGFDFTNR\nLERALLQQELAKIESKEWQASPMIAGRKLSRDLLQTVMSPQQPAYAIGSVQQATLDDVEV\nALNQAKLAFELWSKKPVEERASCLNRFADLLQANMAELMVLTCREAGKTWSDGIAEVREA\nIDFCRYYAKKAQELMSSPQRFNGYTGELNELSLHPRGTILCISPWNFPLAIFTGQVVAGL\nVTGNCVIAKPAEQTPLIAAYAVKLMHQAGIPEGVIQLIPGAGETIGAALVADKRIKAVLF\nTGSTDTANLINRTLATRGGEIIPLIAETGGQNAMIVDSSALLEQVVVDAVTSAFGSAGQR\nCSALRVLYVQEEVYPRTVELLKGAMAELVVGDPQWLSTDVGPVIDKEALSILKNHVENMR\nKHHEILYQCTVDDEALSGYFMPPTAIAIDSISALEKEVFGPILHVIQFKRKDLDKVINQI\nNQTSYGLTLGIHSRINETVDYIRQRVHAGNCYVNRNMIGAVVGLQPFGGEGLSGTGPKAG\nGPNYLIRLCHERTYTVDTTAAGGNASLMSIPEEG",
"mw": 119.178,
"total_mw": 238.356,
"number_molecules": 2,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "50 mM Tris-HCl, 50 mM NaCl, 0.5 mM EDTA, and 0.5 mM THP at pH 7.5.",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "Proline utilization A from Legionella pneumophila 8 mg/mL",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "Mizzou",
"address": "Columbia, MO, USA",
"full_name": "University of Missouri-Columbia",
"webpage": "http://missouri.edu/"
}
],
"contributor_name": "John",
"contributor_surname": "Tanner",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2010-04-20",
"storage_temperature": null,
"cell_temperature": null,
"exposure_time": null,
"number_of_frames": null,
"wavelength": null,
"sample_detector_distance": null,
"concentration_min": null,
"concentration_max": 8.0,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.106,
"s_max": 3.28,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDCW3_fit1_model1_img.png",
"software": "DAMMIF",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDCW3_fit1_model1.pdb",
"model_mw": 168.0,
"bead_radius": 3.3,
"log": null,
"symmetry": "P2",
"comment": "",
"user": 166
},
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDCW3_fit1_model2_img.png",
"software": "DAMFILT",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": "5.0 r6293",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDCW3_fit1_model2.pdb",
"model_mw": 167.693,
"bead_radius": 5.0,
"log": null,
"symmetry": "",
"comment": "",
"user": 166
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDCW3_fit1_fixed_fit_img.png",
"software": "DAMMIF",
"chi_square_value": 4.222,
"p_value": 0.0,
"fit_residual_plot": "SASDCW3_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDCW3_fit1.fir",
"fit_log": null,
"software_version": "",
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": null,
"i0_calibration_standard": null,
"description": null,
"experiment_description": "Synchrotron SAXS data from a solution of Proline utilization A from Legionella pneumophila in 50 mM Tris-HCl, 50 mM NaCl, 0.5 mM EDTA, and 0.5 mM THP at pH 7.5 were collected on the 12.3.1 (SIBYLS) beam line at the Advanced Light Source (ALS; Berkeley, CA, USA) using a MAR 165 CCD detector. One solute concentration of 8 mg/ml was measured. The data were normalized to the intensity of the transmitted beam and radially averaged. The radially averaged scattering of the solvent-blank was subtracted.",
"tags": [],
"intensity_unit": null,
"experimental_mw": 231.0,
"experimental_mw_error": null,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": null,
"porod_mw_error": null,
"pddf_i0": 1474.0,
"pddf_i0_error": 1.4,
"guinier_i0": 1474.93,
"guinier_i0_error": 1.64,
"pddf_rg": 4.69,
"pddf_rg_error": 0.04,
"guinier_rg": 4.63,
"guinier_rg_error": 0.02,
"pddf_dmax": 15.5,
"pddf_dmax_error": null,
"porod_volume": 295.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 1,
"guinier_point_last": 29,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDCW3_datloglog_img.png",
"symmetry": null,
"last_modified": "2026-05-18T10:07:04.771733+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
"code": "SASDCW3",
"status": "success",
"started_at": "2026-08-11T14:09:09.551002+00:00",
"finished_at": "2026-08-11T14:09:18.058791+00:00",
"source_last_modified": "2026-05-18T10:07:04.771733+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDCW3/",
"path": "/data/saxsdb/sasbdb/entries/w3/sasdcw3/source/summary.json",
"size": 9525,
"sha256": "8e5826033f45b212e2f7f3ca7349c3c4c17ec65bf3f94ef4c0342803727ae722"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDCW3.dat",
"path": "/data/saxsdb/sasbdb/entries/w3/sasdcw3/source/SASDCW3.dat",
"size": 23848,
"sha256": "58797610f7d25de574ffde9bbef7f6ed8c9eb6d210f767d977c8957a9e6cb862",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDCW3.out",
"path": "/data/saxsdb/sasbdb/entries/w3/sasdcw3/source/SASDCW3.out",
"size": 48309,
"sha256": "5add13fbfcff04ed992a95c5014bf2fedf055961276919ae1a73745448ae62c3",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDCW3.sascif",
"path": "/data/saxsdb/sasbdb/entries/w3/sasdcw3/source/SASDCW3.sascif",
"size": 296691,
"sha256": "6838d5490caaa273deaffc11f9b1bc87f6f886db96223c25200ae9caf5856e2b",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDCW3.zip",
"path": "/data/saxsdb/sasbdb/entries/w3/sasdcw3/source/SASDCW3.zip",
"size": 62740,
"sha256": "166e32f1fc5759e5b474b3fd42862e9a8217179218b0afe403661840b0cafffa",
"role": "full_entry_zip",
"zip_member_count": 5,
"zip_validation": "central_directory_readable"
}
]
}
