查看完整 summary.json 原文
{
"code": "SASDD43",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "MbsTA",
"publication": null,
"status": "released",
"submitted_date": "2018-01-16",
"released_date": "2019-12-02"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDD43.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDD43.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDD43_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDD43_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDD43_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDD43_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDD43.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus 2M",
"resolution": null
},
"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Mycobacterial cidal toxin",
"short_name": "MbcT",
"sequence": ">MbsT\r\nMDSDALDEGLVQRIDARGTIEWSETCYRYTGAHRDALSGEGARRFGGRWNPPLLFPAIYLADSAQACMVEVERAAQAASTTAEKMLEAAYRLHTIDVTDLAVLDLTTPQAREAVGLENDDIYGDDWSGCQAVGHAAWFLHMQGVLVPAAGGVGLVVTAYEQRTRPGQLQLRQSVDLTPALYQELRAT",
"organism": "Mycobacterium tuberculosis H37Rv",
"uniprot_code": "P9WLP9",
"uniprot_range_first": 1,
"uniprot_range_last": 186,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MSDALDEGLVQRIDARGTIEWSETCYRYTGAHRDALSGEGARRFGGRWNPPLLFPAIYLA\nDSAQACMVEVERAAQAASTTAEKMLEAAYRLHTIDVTDLAVLDLTTPQAREAVGLENDDI\nYGDDWSGCQAVGHAAWFLHMQGVLVPAAGGVGLVVTAYEQRTRPGQLQLRQSVDLTPALY\nQELRAT",
"mw": 20.396,
"total_mw": 20.396,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "30 mM Tris-HCl, 200 mM NaCl, 10% glycerol",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "Mycobacterial suicide toxin (MbsT)",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "EMBL-Hamburg",
"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
"full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
"webpage": "http://www.embl-hamburg.de/index.php"
}
],
"contributor_name": "Diana",
"contributor_surname": "Freire",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2017-05-02",
"storage_temperature": 20.0,
"cell_temperature": 20.3,
"exposure_time": 0.05,
"number_of_frames": 20,
"wavelength": 0.124,
"sample_detector_distance": 2.0,
"concentration_min": 0.4,
"concentration_max": 7.4,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.108,
"s_max": 4.835,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDD43_fit1_model1_img.png",
"software": "SREFLEX",
"pdb_link": [],
"model_title": null,
"type_of_model": "atomic",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDD43_fit1_model1.pdb",
"model_mw": 19.94,
"bead_radius": 1.9,
"log": "https://www.sasbdb.org/media/log_files/log.txt",
"symmetry": null,
"comment": null,
"user": 277
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDD43_fit1_fit_img.png",
"software": "SREFLEX",
"chi_square_value": 1.221,
"p_value": 0.569452,
"fit_residual_plot": "SASDD43_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDD43_fit1.fit",
"fit_log": null,
"software_version": null,
"description": null
},
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDD43_fit2_model1_img.png",
"software": "PDB (Protein Data Bank)",
"pdb_link": [
{
"pdb_code": "6fkg",
"ext_code": "6FKG",
"ext_type": "pdb",
"difference_with_model": "derived"
}
],
"model_title": null,
"type_of_model": "atomic",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDD43_fit2_model1.pdb",
"model_mw": 20.21,
"bead_radius": 1.9,
"log": null,
"symmetry": null,
"comment": null,
"user": 277
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDD43_fit2_fit_img.png",
"software": "CRYSOL",
"chi_square_value": 2.204,
"p_value": 0.0,
"fit_residual_plot": "SASDD43_fit2_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDD43_fit2.fit",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/MbsT_crysol.log",
"software_version": null,
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": null,
"experiment_description": "Synchrotron SAXS data from solutions of Mycobacterial suicide toxin (MbsT) in 30 mM Tris-HCl, 200 mM NaCl, 10% glycerol, pH 7.5, were collected on the P12 beam line at the PETRA III storage ring (Hamburg, Germany) using a Pilatus 2M detector at a sample-detector distance of 2 m and at a wavelength of λ = 0.124 nm (l(s) vs s, where s = 4πsinθ/λ and 2θ is the scattering angle). Solute concentrations ranging between 0.4 and 7.4 mg/ml were measured at 20.3°C. 20 successive 0.050 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 18.0,
"experimental_mw_error": null,
"guinier_i0_mw": 18.0,
"guinier_i0_mw_error": 2.0,
"porod_mw": 17.0,
"porod_mw_error": null,
"pddf_i0": 18610.0,
"pddf_i0_error": 14.0,
"guinier_i0": 18612.1,
"guinier_i0_error": 21.0,
"pddf_rg": 1.747,
"pddf_rg_error": 0.002,
"guinier_rg": 1.75,
"guinier_rg_error": 0.1,
"pddf_dmax": 5.6,
"pddf_dmax_error": null,
"porod_volume": 30.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 1,
"guinier_point_last": 231,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDD43_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-06-21T07:56:39.492710+02:00",
"bragg_peak": []
}
查看完整 manifest.json 原文
{
"code": "SASDD43",
"status": "success",
"started_at": "2026-08-11T13:51:53.022061+00:00",
"finished_at": "2026-08-11T13:52:08.906129+00:00",
"source_last_modified": "2023-06-21T07:56:39.492710+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDD43/",
"path": "/data/saxsdb/sasbdb/entries/43/sasdd43/source/summary.json",
"size": 8261,
"sha256": "20fbdcc2fa6b5d9f627e6300ebfc3571c021cedc5d45ca6ba45c3f66894f0ba8"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDD43.dat",
"path": "/data/saxsdb/sasbdb/entries/43/sasdd43/source/SASDD43.dat",
"size": 78945,
"sha256": "d251d951cab2797600445c9784f9af4bd2023affeadf823e5834baaa9531317e",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDD43.out",
"path": "/data/saxsdb/sasbdb/entries/43/sasdd43/source/SASDD43.out",
"size": 144704,
"sha256": "018d685de9e3b7ef010b94672ccbd6952c1f7da3e7ab4eb3d2d04356357d0365",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDD43.sascif",
"path": "/data/saxsdb/sasbdb/entries/43/sasdd43/source/SASDD43.sascif",
"size": 652601,
"sha256": "242be65607b27785f7812ad94864080e18c1dc99e990d6cd126461cf0d854220",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDD43.zip",
"path": "/data/saxsdb/sasbdb/entries/43/sasdd43/source/SASDD43.zip",
"size": 208246,
"sha256": "26c6cdee899b7a28dd90ed424db4ae300c8cee25582b92b705b59db45bdcd546",
"role": "full_entry_zip",
"zip_member_count": 6,
"zip_validation": "central_directory_readable"
}
]
}