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SASDD85

PDZK1 Domain 1-4

数据类型：SASBDB 实验数据 状态：Published 曲线类型：Merged 最后更新：2023-06-21T07:56:39.492710+02:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · PDZK1 Domain 1-4

浓度0.8 – 6.4 缓冲液 / pH20mM Hepes 150 NaCl 0.5 mM TCEP / 7.5
实验温度15.0 设备 / 束线PETRA III / EMBL P12
波长0.124 nm曝光0.045 s × 30

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Uncharacterized protein C1orf159
查看序列
MHHHHHHSSGVDLGTENLYFQSMMTSTFNPRECKLSKQEGQNYGFFLRIEKDTEGHLVRVVEKCSPAEKAGLQDGDRVLRINGVFVDKEEHMQVVDLVRKSGNSVTLLVLDGDSYEKAVKTRVDLKELGQSQKEQGLSDNILSPVMNGGVQTWTQPRLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKIQFKRETASLKLLPHQPRIVEMKKGSNGYGFYLRAGSEQKGQIIKDIDSGSPAEEAGLKNNDLVVAVNGESVETLDHDSVVEMIRKGGDQTSLLVVDKETDNMYRLAHFSPFLYYQSQELPNGSVKEAPAPTPTSLEVSSPPDTTEEVDHKPKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAY
proteinHomo sapiensQ5T2W77–460monomer分子数 153.405 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
11799[3]0.0279412–3.77706 1/nm含误差列缺失 075sasbdb/entries/85/sasdd85/source/SASDD85.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)14.98—nm
i0Guinier0.043—1/cm
i0P(r)0.0435—1/cm
mwExperimental50.2—kDa
mwGuinier I(0)50.2—kDa
mwPorod75.0—kDa
porod_volumePorod120.03—nm³
rgGuinier3.940.02nm
rgP(r)4.056—nm

这些数值是 SASBDB 来源记录，不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”；未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称20mM Hepes 150 NaCl 0.5 mM TCEP缓冲液浓度—
pH7.5添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2016-10-28储存 / 测量温度11.0 / 15.0
曝光时间0.045帧数30
波长0.124样品-探测器距离4.0
光源X-ray synchrotron探测器Pilatus 2M
机构 / 束线PETRA III / EMBL P12 · DESY; Hamburg, Germany
q 范围0.028 – 3.777样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
curvesasbdb/entries/85/sasdd85/source/SASDD85.datdownloaded810144fa499759cf87c2204813a14743e24418f2554e0f9b40dab0de7a699132a84a7下载查看原文件源站
full_entry_zipsasbdb/entries/85/sasdd85/source/SASDD85.zipdownloaded258417c50107aac0cda025e0942b12ffcc99fe7cd454234163e90800acfdbbae1bef7a下载查看原文件源站
pddfsasbdb/entries/85/sasdd85/source/SASDD85.outdownloaded86315f4fd6e93ce73b8f1e9cfd51bc2d48feedbd55c2ffbd4679b61e3a67083ecd4c9下载查看原文件源站
sascifsasbdb/entries/85/sasdd85/source/SASDD85.sascifdownloaded8050150c06db3868dab1938f403de9299ffc601ac5ad6b73d886f5616b29e6e8b6c327下载查看原文件源站
summarysasbdb/entries/85/sasdd85/source/summary.jsondownloaded906042d90a149e88c1b802718d189b321ed7c43eea75d24e54dce7d3a9a2d6bb4676下载查看原文件源站
curve：来源记录
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full_entry_zip：来源记录与 ZIP 内部目录（15 项）
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pddf：来源记录
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sascif：来源记录
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summary：来源记录
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全部来源字段（无筛选）

这里自动展开来源记录中的每一个字段，包括空值、列表成员和页面上方已展示过的字段。

summary.json：202 个字段值
字段路径原始值
codeSASDD85
statusPublished
type_of_curveMerged
angular_unit1/nm
project.titleProbing the Architecture of a Multi-PDZ Domain Protein: Structure of PDZK1 in Solution.
project.publication.titleProbing the Architecture of a Multi-PDZ Domain Protein: Structure of PDZK1 in Solution.
project.publication.author_listHajizadeh NR, Pieprzyk J, Skopintsev P, Flayhan A, Svergun DI, Löw C
project.publication.journalStructure
project.publication.doi10.1016/j.str.2018.07.016
project.publication.pmid30220543
project.publication.published_date2018 Nov 6
project.statusreleased
project.submitted_date2018-03-18
project.released_date2018-08-29
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experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus 2M
experiment.instrument.detector.resolutionnull
experiment.instrument.namePETRA III
experiment.instrument.cityDESY; Hamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL P12
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameUncharacterized protein C1orf159
experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequenceMHHHHHHSSGVDLGTENLYFQSMMTSTFNPRECKLSKQEGQNYGFFLRIEKDTEGHLVRVVEKCSPAEKAGLQDGDRVLRINGVFVDKEEHMQVVDLVRKSGNSVTLLVLDGDSYEKAVKTRVDLKELGQSQKEQGLSDNILSPVMNGGVQTWTQPRLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKIQFKRETASLKLLPHQPRIVEMKKGSNGYGFYLRAGSEQKGQIIKDIDSGSPAEEAGLKNNDLVVAVNGESVETLDHDSVVEMIRKGGDQTSLLVVDKETDNMYRLAHFSPFLYYQSQELPNGSVKEAPAPTPTSLEVSSPPDTTEEVDHKPKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAY
experiment.sample.molecule[0].organismHomo sapiens
experiment.sample.molecule[0].uniprot_codeQ5T2W7
experiment.sample.molecule[0].uniprot_range_first7
experiment.sample.molecule[0].uniprot_range_last460
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMALRHLALLAGLLVGVASKSMENTAQLPECCVDVVGVNASCPGASLCGPGCYRRWNADGS ASCVRCGNGTLPAYNGSECRSFAGPGAPFPMNRSSGTPGRPHPGAPRVAASLFLGTFFIS SGLILSVAGFFYLKRSSKLPRACYRRNKAPALQPGEAAAMIPPPQSSAPPEDRRSRPPPG PPEQPSLQWCWVRRTQESARTEAALRQAGAAPGQGHGSRCLPG
experiment.sample.molecule[0].mw53.405
experiment.sample.molecule[0].total_mw53.405
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name20mM Hepes 150 NaCl 0.5 mM TCEP
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.namePDZK1 Domain 1-4
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameEMBL-Hamburg
experiment.contributor[0].affiliation[0].addressNotkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_nameNelly
experiment.contributor[0].contributor_surnameHajizadeh
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2016-10-28
experiment.storage_temperature11.0
experiment.cell_temperature15.0
experiment.exposure_time0.045
experiment.number_of_frames30
experiment.wavelength0.124
experiment.sample_detector_distance4.0
experiment.concentration_min0.8
experiment.concentration_max6.4
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.028
experiment.s_max3.777
experiment.total_exposure_timenull
experiment.seccolumnnull
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fits[2].chi_square_value1.15
fits[2].p_value7e-06
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pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unit1/cm
experimental_mw50.2
experimental_mw_errornull
guinier_i0_mw50.2
guinier_i0_mw_errornull
porod_mw75.0
porod_mw_errornull
pddf_i00.0435
pddf_i0_errornull
guinier_i00.043
guinier_i0_errornull
pddf_rg4.056
pddf_rg_errornull
guinier_rg3.94
guinier_rg_error0.02
pddf_dmax14.98
pddf_dmax_errornull
porod_volume120.03
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first16
guinier_point_last147
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDD85_datloglog_img.png
symmetrynull
last_modified2023-06-21T07:56:39.492710+02:00
bragg_peak[]
manifest.json：36 个字段值
字段路径原始值
codeSASDD85
statussuccess
started_at2026-08-11T14:41:40.857906+00:00
finished_at2026-08-11T14:41:51.464724+00:00
source_last_modified2023-06-21T07:56:39.492710+02:00
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查看完整 summary.json 原文
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  "type_of_curve": "Merged",
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    "title": "Probing the Architecture of a Multi-PDZ Domain Protein: Structure of PDZK1 in Solution.",
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      "title": "Probing the Architecture of a Multi-PDZ Domain Protein: Structure of PDZK1 in Solution.",
      "author_list": "Hajizadeh NR, Pieprzyk J, Skopintsev P, Flayhan A, Svergun DI, Löw C",
      "journal": "Structure",
      "doi": "10.1016/j.str.2018.07.016",
      "pmid": "30220543",
      "published_date": "2018 Nov 6"
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    "submitted_date": "2018-03-18",
    "released_date": "2018-08-29"
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            "short_name": "EMBL-Hamburg",
            "address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
            "full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
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查看完整 manifest.json 原文
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