Neurexin 1a L5L6 with ss6 insert

{
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  "status": "Published",
  "type_of_curve": "Merged",
  "angular_unit": "1/A",
  "project": {
    "title": "Structural Plasticity of Neurexin 1α: Implications for its Role as Synaptic Organizer.",
    "publication": {
      "title": "Structural Plasticity of Neurexin 1α: Implications for its Role as Synaptic Organizer.",
      "author_list": "Liu J, Misra A, Reddy MVVVS, White MA, Ren G, Rudenko G",
      "journal": "J Mol Biol",
      "doi": "10.1016/j.jmb.2018.08.026",
      "pmid": "30193986",
      "published_date": "2018 Oct 19"
    },
    "status": "released",
    "submitted_date": "2018-03-22",
    "released_date": "2018-09-10"
  },
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  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDDA5_kratky_img.png",
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  "experiment": {
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      "detector": {
        "type": null,
        "name": "Pilatus 100K",
        "resolution": 172.0
      },
      "name": "Sealy Center For Structural Biology, UTMB-G",
      "city": "Galveston, TX",
      "country": "USA",
      "beamline_name": "Rigaku BioSAXS-1000",
      "beam_geometry": null,
      "type_of_source": "X-ray in house",
      "point_source": null,
      "line_collimation": null,
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      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Neurexin 1a L5L6 with ss6 insert",
          "short_name": "L5L6ss6",
          "sequence": "ADPVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLH\r\nYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLK\r\nSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEVA\r\nLMKADLQGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQ\r\nITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVG\r\nTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIII\r\nGGKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVGEVPS\r\nASTSHHHHHH",
          "organism": "Homo sapiens",
          "uniprot_code": "Q9ULB1",
          "uniprot_range_first": 904,
          "uniprot_range_last": 1307,
          "oligomerization": "monomer",
          "molecular_type": "protein",
          "uniprot_sequence": "MGTALLQRGGCFLLCLSLLLLGCWAELGSGLEFPGAEGQWTRFPKWNACCESEMSFQLKT\nRSARGLVLYFDDEGFCDFLELILTRGGRLQLSFSIFCAEPATLLADTPVNDGAWHSVRIR\nRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFSGLFVGGLPPELRAAALKLTLASVREREPF\nKGWIRDVRVNSSQVLPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQ\nAVCDCSRTGFRGKDCSQEDNNVEGLAHLMMGDQGKSKGKEEYIATFKGSEYFCYDLSQNP\nIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNG\nKFNDNAWHDVKVTRNLRQHSGIGHAMVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSP\nSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLD\nPITFETPESFISLPKWNAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDF\nFAIEMLDGHLYLLLDMGSGTIKIKALLKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTA\nPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMA\nEVQSTAGVKPSCSKETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLS\nYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTV\nNLDCIRINCNSSKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHT\nRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFR\nNIIADPVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKG\nYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNL\nDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGC\nEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWP\nPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAI\nEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQG\nQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVGEVPSSMTTESTATAMQSEMSTS\nIMETTTTLATSTARRGKPPTKEPISQTTDDILVASAECPSDDEDIDPCEPSSGGLANPTR\nAGGREPYPGSAEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYHVDESRN\nYISNSAQSNGAVVKEKQPSSAKSSNKNKKNKDKEYYV",
          "mw": 45.5,
          "total_mw": 45.0,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        }
      ],
      "buffer": {
        "name": "20 mM HEPES pH 8, 150 mM NaCl, 0.5mM CaCl2",
        "concentration_unit": null,
        "comment": "N1a Buffer",
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 8.0,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Neurexin 1a L5L6 with ss6 insert",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": "Texas, USA",
            "full_name": "University of Texas Medical Branch",
            "webpage": "http://www.bmb.utmb.edu/"
          }
        ],
        "contributor_name": "Mark",
        "contributor_surname": "White",
        "orcid": null
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2016-09-26",
    "storage_temperature": 10.0,
    "cell_temperature": 10.0,
    "exposure_time": 10.0,
    "number_of_frames": 3,
    "wavelength": 0.15418,
    "sample_detector_distance": 0.4838,
    "concentration_min": 2.0,
    "concentration_max": 4.0,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.18,
    "s_max": 6.797,
    "total_exposure_time": null,
    "seccolumn": null
  },
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        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDDA5_fit1_model1_img.png",
          "software": "CORAL",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "mix",
          "software_version": null,
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          "model_mw": 45.62,
          "bead_radius": 1.9,
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          "symmetry": "P1",
          "comment": null,
          "user": 85
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      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDDA5_fit1_fixed_fit_img.png",
      "software": "CORAL",
      "chi_square_value": 3.23,
      "p_value": 1e-06,
      "fit_residual_plot": "SASDDA5_fit1_fitresiduals_img.png",
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      "software": "EOM/GAJOE",
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  "description": null,
  "experiment_description": "SAXS data from solutions of Neurexin 1a L5L6 with ss6 insert in 20 mM HEPES pH 8, 150 mM NaCl, 0.5mM CaCl2, pH 8 were collected on a Rigaku BioSAXS-1000 instrument at the Sealy Center For Structural Biology, UTMB-G (Galveston, TX, USA) using a Kratky-2D Rigaku BioSAXS-1000 detector at a sample-detector distance of 0.5 m and at a wavelength of λ = 0.15418 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 2 and 4 mg/ml were measured at 10°C. Three successive 10 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve.",
  "tags": [],
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  "pddf_dmax_error": 0.5,
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  "estimated_volume_error": null,
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  "symmetry": null,
  "last_modified": "2020-08-28T15:28:00.709111+02:00",
  "bragg_peak": []
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