SASDDC6

Small glutamine-rich tetratricopeptide repeat-containing protein alpha (N-terminal-TPR domains; SGTA_NT)

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Merged 最后更新:2023-06-21T07:56:39.492710+02:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Small glutamine-rich tetratricopeptide repeat-containing protein alpha (N-terminal-TPR domains; SGTA_NT)

浓度0.6 – 4.5 缓冲液 / pH10 mM potassium phosphate, 100 mM NaCl / 6.0
实验温度25.0 设备 / 束线PETRA III / EMBL P12
波长0.124 nm曝光0.045 s × 20

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Small glutamine-rich tetratricopeptide repeat-containing protein alpha Nterminal-TPR domains
查看序列
GSMDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPEIFEAAATGKEMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAPSPT
proteinHomo sapiensO437651–213dimer分子数 223.592 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
11808[3]0.0269502–4.80121 1/nm含误差列缺失 022sasbdb/entries/c6/sasddc6/source/SASDDC6.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
i0Guinier10844.016.0—
mwExperimental41.0—kDa
rgGuinier3.60.1nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称10 mM potassium phosphate, 100 mM NaCl缓冲液浓度—
pH6.0添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2015-06-05储存 / 测量温度— / 25.0
曝光时间0.045帧数20
波长0.124样品-探测器距离3.0
光源X-ray synchrotron探测器Pilatus 2M
机构 / 束线PETRA III / EMBL P12 · DESY; Hamburg, Germany
q 范围0.027 – 4.801样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图

可下载文件

类别文件状态大小校验值下载与查看
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pddfsasbdb/entries/c6/sasddc6/source/SASDDC6.outnot_listed——下载查看原文件
sascifsasbdb/entries/c6/sasddc6/source/SASDDC6.sascifdownloaded103708b1b743dc040a26f17554a626a551fd14229f60c11b41fe325bd883da2248776c下载查看原文件源站
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curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(1 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:134 个字段值
字段路径原始值
codeSASDDC6
statusPublished
type_of_curveMerged
angular_unit1/nm
project.titleStructural complexity of the co-chaperone SGTA: a conserved C-terminal region is implicated in dimerization and substrate quality control.
project.publication.titleStructural complexity of the co-chaperone SGTA: a conserved C-terminal region is implicated in dimerization and substrate quality control.
project.publication.author_listMartínez-Lumbreras S, Krysztofinska EM, Thapaliya A, Spilotros A, Matak-Vinkovic D, Salvadori E, Roboti P, Nyathi Y, Muench JH, Roessler MM, Svergun DI, High S, Isaacson RL
project.publication.journalBMC Biol
project.publication.doi10.1186/s12915-018-0542-3
project.publication.pmid29996828
project.publication.published_date2018 Jul 11
project.statusreleased
project.submitted_date2018-05-02
project.released_date2018-06-11
pddf_datanull
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pddf_plotnull
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experiment.instrument.namePETRA III
experiment.instrument.cityDESY; Hamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL P12
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experiment.instrument.type_of_sourceX-ray synchrotron
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experiment.sample.molecule[0].long_nameSmall glutamine-rich tetratricopeptide repeat-containing protein alpha Nterminal-TPR domains
experiment.sample.molecule[0].short_nameSGTA_NT-TPR
experiment.sample.molecule[0].sequenceGSMDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPEIFEAAATGKEMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAPSPT
experiment.sample.molecule[0].organismHomo sapiens
experiment.sample.molecule[0].uniprot_codeO43765
experiment.sample.molecule[0].uniprot_range_first1
experiment.sample.molecule[0].uniprot_range_last213
experiment.sample.molecule[0].oligomerizationdimer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPE IFEAAATGKEMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA YYKKALELDPDNETYKSNLKIAELKLREAPSPTGGVGSFDIAGLLNNPGFMSMASNLMNN PQIQQLMSGMISGGNNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQIR SRTPSASNDDQQE
experiment.sample.molecule[0].mw23.592
experiment.sample.molecule[0].total_mw47.184
experiment.sample.molecule[0].number_molecules2
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name10 mM potassium phosphate, 100 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
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experiment.sample.buffer.pkanull
experiment.sample.buffer.ph6.0
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experiment.sample.purity_methodnull
experiment.sample.nameSmall glutamine-rich tetratricopeptide repeat-containing protein alpha (N-terminal-TPR domains; SGTA_NT)
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
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experiment.sample.dry_volnull
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experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressLondon, UK
experiment.contributor[0].affiliation[0].full_nameKing's College London
experiment.contributor[0].affiliation[0].webpagehttps://www.kcl.ac.uk
experiment.contributor[0].contributor_nameRivka
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experiment.storage_temperaturenull
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fits[]
estimated_volume_methodnull
pddf_softwarenull
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i0_calibration_standardnull
descriptionnull
experiment_descriptionSynchrotron SAXS data from solutions of the small glutamine-rich tetratricopeptide repeat-containing protein alpha (N-terminal-TPR domains; SGTA_NT) in 10 mM potassium phosphate, 100 mM NaCl, pH 6, were collected on the EMBL P12 beam line at the PETRA III storage ring (DESY, Hamburg, Germany) using a Pilatus 2M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.124 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 0.6 and 4.5 mg/ml were measured at 25°C. 20 successive 0.045 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve.
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intensities_log_log_plotSASDDC6_datloglog_img.png
symmetrynull
last_modified2023-06-21T07:56:39.492710+02:00
bragg_peak[]
manifest.json:33 个字段值
字段路径原始值
codeSASDDC6
statussuccess
started_at2026-08-11T15:06:10.735614+00:00
finished_at2026-08-11T15:06:17.505395+00:00
source_last_modified2023-06-21T07:56:39.492710+02:00
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查看完整 summary.json 原文
{
  "code": "SASDDC6",
  "status": "Published",
  "type_of_curve": "Merged",
  "angular_unit": "1/nm",
  "project": {
    "title": "Structural complexity of the co-chaperone SGTA: a conserved C-terminal region is implicated in dimerization and substrate quality control.",
    "publication": {
      "title": "Structural complexity of the co-chaperone SGTA: a conserved C-terminal region is implicated in dimerization and substrate quality control.",
      "author_list": "Martínez-Lumbreras S, Krysztofinska EM, Thapaliya A, Spilotros A, Matak-Vinkovic D, Salvadori E, Roboti P, Nyathi Y, Muench JH, Roessler MM, Svergun DI, High S, Isaacson RL",
      "journal": "BMC Biol",
      "doi": "10.1186/s12915-018-0542-3",
      "pmid": "29996828",
      "published_date": "2018 Jul 11"
    },
    "status": "released",
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    "released_date": "2018-06-11"
  },
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  "pddf_rg_error": null,
  "guinier_rg": 3.6,
  "guinier_rg_error": 0.1,
  "pddf_dmax": null,
  "pddf_dmax_error": null,
  "porod_volume": null,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 15,
  "guinier_point_last": 128,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDDC6_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2023-06-21T07:56:39.492710+02:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
{
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  "status": "success",
  "started_at": "2026-08-11T15:06:10.735614+00:00",
  "finished_at": "2026-08-11T15:06:17.505395+00:00",
  "source_last_modified": "2023-06-21T07:56:39.492710+02:00",
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      "status": "downloaded",
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      "path": "/data/saxsdb/sasbdb/entries/c6/sasddc6/source/SASDDC6.dat",
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      "role": "curve"
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      "role": "pddf",
      "status": "not_listed",
      "path": "/data/saxsdb/sasbdb/entries/c6/sasddc6/source/SASDDC6.out"
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      "status": "downloaded",
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      "path": "/data/saxsdb/sasbdb/entries/c6/sasddc6/source/SASDDC6.sascif",
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      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDDC6.zip",
      "path": "/data/saxsdb/sasbdb/entries/c6/sasddc6/source/SASDDC6.zip",
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}