下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。
打开 SASBDB 原始条目
缓冲液与样品属性
采集条件与仪器
SASBDB 原始图
实验 I(q)
实验 I(q) log-log
Guinier 图
Kratky 图
P(r) 图
可下载文件
curve:来源记录
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"role": "curve",
"sha256": "c5081d95e9ea6732d50e2e451b46b8005876d1f6771f1f6750b2a18320cb631f",
"size": 55021,
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDDE5.dat"
}full_entry_zip:来源记录与 ZIP 内部目录(2 项)
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"role": "full_entry_zip",
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"size": 40866,
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDDE5.zip",
"zip_member_count": 2,
"zip_members": [
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"name": "SASDDE5/experimental_data/SASDDE5.dat",
"size": 55021
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"name": "SASDDE5/pddf/SASDDE5.out",
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"zip_validation": "central_directory_readable"
}pddf:来源记录
{
"path": "/data/saxsdb/sasbdb/entries/e5/sasdde5/source/SASDDE5.out",
"role": "pddf",
"sha256": "066d722a2d001e1d690cce8a6b9e3005934a22299a58c0ab5cf3459ae6010b29",
"size": 103341,
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDDE5.out"
}sascif:来源记录
{
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"role": "sascif",
"sha256": "00405767e118e2252190b21e93c140cef7d7e3530c7ff4f804f7921270730ecb",
"size": 131340,
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDDE5.sascif"
}summary:来源记录
{
"path": "/data/saxsdb/sasbdb/entries/e5/sasdde5/source/summary.json",
"sha256": "47dc97ac1f861d07d658df9469961704c444591e6ddf1c7f613dcd180a48d4d4",
"size": 6319,
"status": "downloaded",
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全部来源字段(无筛选)
这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。
summary.json:134 个字段值
manifest.json:36 个字段值
查看完整 summary.json 原文
{
"code": "SASDDE5",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "Conformational States of ABC Transporter MsbA in a Lipid Environment Investigated by Small-Angle Scattering Using Stealth Carrier Nanodiscs.",
"publication": {
"title": "Conformational States of ABC Transporter MsbA in a Lipid Environment Investigated by Small-Angle Scattering Using Stealth Carrier Nanodiscs.",
"author_list": "Josts I, Nitsche J, Maric S, Mertens HD, Moulin M, Haertlein M, Prevost S, Svergun DI, Busch S, Forsyth VT, Tidow H",
"journal": "Structure",
"doi": "10.1016/j.str.2018.05.007",
"pmid": "29937358",
"published_date": "2018 Aug 7"
},
"status": "released",
"submitted_date": null,
"released_date": "2018-06-27"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDDE5.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDDE5.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDDE5_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDDE5_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDDE5_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDDE5_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDDE5.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus 2M",
"resolution": null
},
"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Nucleotide Binding Domain of Lipid A export ATP-binding/permease protein MsbA",
"short_name": "NBD-MsbA",
"sequence": "RATGDVEFRNVTFT\r\nYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVA\r\nLVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA\r\nIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERG\r\nTHNDLLEHRGVYAQLHKMQFGQ",
"organism": "Escherichia coli",
"uniprot_code": "P60752",
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKTD\nRSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQS\nTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSI\nAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQ\nGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKS\nLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRVIERATGDVEFRNVTFTYPGRDVPALR\nNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVA\nLVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVL\nLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS\nTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQFGQ",
"mw": 27.263,
"total_mw": 27.263,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "30 mM Tris, 150 mM NaCl, 0.5 mM TCEP",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "NBD-MsbA (apo)",
"ext_coefficient": null,
"contrast": 2.842,
"specific_vol": 0.738,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "EMBL-Hamburg",
"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
"full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
"webpage": "http://www.embl-hamburg.de/index.php"
}
],
"contributor_name": "Haydyn",
"contributor_surname": "Mertens",
"orcid": null
}
],
"concentration_method": "A280",
"concentration_unit": null,
"date": "2017-05-30",
"storage_temperature": 20.0,
"cell_temperature": 20.0,
"exposure_time": 0.05,
"number_of_frames": 20,
"wavelength": 0.124,
"sample_detector_distance": 3.3,
"concentration_min": null,
"concentration_max": 18.0,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.061,
"s_max": 3.32,
"total_exposure_time": 1.0,
"seccolumn": null
},
"fits": [],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "2.8.3",
"i0_calibration_standard": "water",
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": "1/cm",
"experimental_mw": 30.12,
"experimental_mw_error": 5.0,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": 29.6,
"porod_mw_error": 29.6,
"pddf_i0": 0.022,
"pddf_i0_error": 0.001,
"guinier_i0": 0.022,
"guinier_i0_error": 0.001,
"pddf_rg": 2.17,
"pddf_rg_error": 0.1,
"guinier_rg": 2.15,
"guinier_rg_error": 0.1,
"pddf_dmax": 7.3,
"pddf_dmax_error": 0.5,
"porod_volume": 47.39,
"porod_volume_error": 5.0,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 12,
"guinier_point_last": 198,
"pddf_point_first": 12,
"pddf_point_last": 1186,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDDE5_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-06-21T07:56:39.492710+02:00",
"bragg_peak": []
}
查看完整 manifest.json 原文
{
"code": "SASDDE5",
"status": "success",
"started_at": "2026-08-11T14:46:15.692570+00:00",
"finished_at": "2026-08-11T14:46:24.240971+00:00",
"source_last_modified": "2023-06-21T07:56:39.492710+02:00",
"files": [
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"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDDE5/",
"path": "/data/saxsdb/sasbdb/entries/e5/sasdde5/source/summary.json",
"size": 6319,
"sha256": "47dc97ac1f861d07d658df9469961704c444591e6ddf1c7f613dcd180a48d4d4"
},
{
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"url": "https://www.sasbdb.org/media/intensities_files/SASDDE5.dat",
"path": "/data/saxsdb/sasbdb/entries/e5/sasdde5/source/SASDDE5.dat",
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"role": "curve"
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{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDDE5.out",
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"size": 103341,
"sha256": "066d722a2d001e1d690cce8a6b9e3005934a22299a58c0ab5cf3459ae6010b29",
"role": "pddf"
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}