SASDDK2

Aspergillus fumigatus UDP galactopyranose mutase

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2026-05-18T10:06:15.444830+02:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Aspergillus fumigatus UDP galactopyranose mutase

浓度— – 9.0 缓冲液 / pH20 mM HEPES, 45 mM NaCl, 0.5 mM Tris(hydroxypropyl)phosphine / 7.5
实验温度10.0 设备 / 束线Advanced Light Source (ALS) / 12.3.1 (SIBYLS)
波长0.1127 nm曝光— s × —

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Aspergillus fumigatus UDP galactopyranose mutase
查看序列
AIAMTHPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYKYFDDCLDEALPKEDDWYTHQRISYVRCQGQWVPYPFQNNISMLPKEEQVKCIDGMIDAALEARVANTKPKTFDEWIVRMMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNANNKTVTLQDGTTIGYKKLVSTMAVDFLAEAMNDQELVGLTKQLFYSSTHVIGVGVRGSRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKEGPYWSIMLEVSESSMKPVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQDKDIWSRGRFGSWRYEVGNQDHSFMLGVEAVDNIVNGAVELTLNYPDFVNGRQNTERRLVDGAQVFAKSKAQ
protein———–—tetramer分子数 457.068 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1512[3]0.010641–0.321334 1/A含误差列缺失 00sasbdb/entries/k2/sasddk2/source/SASDDK2.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)14.68—Å
i0Guinier892.911.7arbitrary
i0P(r)893.51.0arbitrary
mwExperimental228.3—kDa
porod_volumePorod308.0—ų
rgGuinier4.7270.013Å
rgP(r)4.77—Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称20 mM HEPES, 45 mM NaCl, 0.5 mM Tris(hydroxypropyl)phosphine缓冲液浓度—
pH7.5添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2010-04-19储存 / 测量温度— / 10.0
曝光时间—帧数—
波长0.1127样品-探测器距离—
光源X-ray synchrotron探测器MAR 165 CCD
机构 / 束线Advanced Light Source (ALS) / 12.3.1 (SIBYLS) · Berkeley, CA, USA
q 范围0.106 – 3.213样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(4 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:156 个字段值
字段路径原始值
codeSASDDK2
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleCrystal structures and small-angle x-ray scattering analysis of UDP-galactopyranose mutase from the pathogenic fungus Aspergillus fumigatus.
project.publication.titleCrystal structures and small-angle x-ray scattering analysis of UDP-galactopyranose mutase from the pathogenic fungus Aspergillus fumigatus.
project.publication.author_listDhatwalia R, Singh H, Oppenheimer M, Karr DB, Nix JC, Sobrado P, Tanner JJ
project.publication.journalJ Biol Chem
project.publication.doi10.1074/jbc.M111.327536
project.publication.pmid22294687
project.publication.published_date2012 Mar 16
project.statusreleased
project.submitted_date2018-01-09
project.released_date2018-01-10
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experiment.instrument.nameAdvanced Light Source (ALS)
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experiment.instrument.countryUSA
experiment.instrument.beamline_name12.3.1 (SIBYLS)
experiment.instrument.beam_geometry
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experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameAspergillus fumigatus UDP galactopyranose mutase
experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequenceAIAMTHPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYKYFDDCLD EALPKEDDWYTHQRISYVRCQGQWVPYPFQNNISMLPKEEQVKCIDGMIDAALEARVANTKPKTFDEWIVRMMGTGIADL FMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIAVANTLPKEKTRFG EKGKVTKVNANNKTVTLQDGTTIGYKKLVSTMAVDFLAEAMNDQELVGLTKQLFYSSTHVIGVGVRGSRPERIGDKCWLY FPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKEGPYWSIMLEVSESSMKPVNQETILADCIQGLVN TEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQDKDIWSRGRFGSWRYEVGNQDHSFMLGVEAVDNIVNGAV ELTLNYPDFVNGRQNTERRLVDGAQVFAKSKAQ
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experiment.sample.molecule[0].uniprot_range_firstnull
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experiment.sample.molecule[0].oligomerizationtetramer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequencenull
experiment.sample.molecule[0].mw57.068
experiment.sample.molecule[0].total_mw228.272
experiment.sample.molecule[0].number_molecules4
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name20 mM HEPES, 45 mM NaCl, 0.5 mM Tris(hydroxypropyl)phosphine
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameAspergillus fumigatus UDP galactopyranose mutase
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameMizzou
experiment.contributor[0].affiliation[0].addressColumbia, MO, USA
experiment.contributor[0].affiliation[0].full_nameUniversity of Missouri-Columbia
experiment.contributor[0].affiliation[0].webpagehttp://missouri.edu/
experiment.contributor[0].contributor_nameJohn
experiment.contributor[0].contributor_surnameTanner
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2010-04-19
experiment.storage_temperaturenull
experiment.cell_temperature10.0
experiment.exposure_timenull
experiment.number_of_framesnull
experiment.wavelength0.1127
experiment.sample_detector_distancenull
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experiment.concentration_max9.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.106
experiment.s_max3.213
experiment.total_exposure_timenull
experiment.seccolumnnull
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fits[0].models[0].softwareMES-FoXS
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modelatomic
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fits[0].models[0].model_mw225.6
fits[0].models[0].bead_radius1.9
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fits[0].models[0].commentnull
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fits[0].chi_square_value12.039064
fits[0].p_value0.0
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fits[0].descriptionnull
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionnull
experiment_descriptionSynchrotron SAXS data from solutions of Aspergillus fumigatus UDP galactopyranose mutase in 20 mM HEPES, 45 mM NaCl, 0.5 mM Tris(hydroxypropyl)phosphine, pH 7.5, were collected on the 12.3.1 SIBYLS beam line at the Advanced Light Source storage ring (ALS; Berkeley, CA, USA) using a MAR 165 CCD detector at a wavelength of λ = 0.1127 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 9.00 mg/ml was measured at 10°C. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.
tags[]
intensity_unitarbitrary
experimental_mw228.3
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mwnull
porod_mw_errornull
pddf_i0893.5
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guinier_i0892.91
guinier_i0_error1.7
pddf_rg4.77
pddf_rg_errornull
guinier_rg4.727
guinier_rg_error0.013
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pddf_dmax_errornull
porod_volume308.0
porod_volume_errornull
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estimated_volume_errornull
guinier_point_first1
guinier_point_last28
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDDK2_datloglog_img.png
symmetrynull
last_modified2026-05-18T10:06:15.444830+02:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDDK2
statussuccess
started_at2026-08-11T13:40:07.616088+00:00
finished_at2026-08-11T13:40:17.546809+00:00
source_last_modified2026-05-18T10:06:15.444830+02:00
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查看完整 summary.json 原文
{
  "code": "SASDDK2",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "Crystal structures and small-angle x-ray scattering analysis of UDP-galactopyranose mutase from the pathogenic fungus Aspergillus fumigatus.",
    "publication": {
      "title": "Crystal structures and small-angle x-ray scattering analysis of UDP-galactopyranose mutase from the pathogenic fungus Aspergillus fumigatus.",
      "author_list": "Dhatwalia R, Singh H, Oppenheimer M, Karr DB, Nix JC, Sobrado P, Tanner JJ",
      "journal": "J Biol Chem",
      "doi": "10.1074/jbc.M111.327536",
      "pmid": "22294687",
      "published_date": "2012 Mar 16"
    },
    "status": "released",
    "submitted_date": "2018-01-09",
    "released_date": "2018-01-10"
  },
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查看完整 manifest.json 原文
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