查看完整 summary.json 原文
{
"code": "SASDDM8",
"status": "Published",
"type_of_curve": "Merged",
"angular_unit": "1/nm",
"project": {
"title": "Integrin α6β4 Recognition of a Linear Motif of Bullous Pemphigoid Antigen BP230 Controls Its Recruitment to Hemidesmosomes.",
"publication": {
"title": "Integrin α6β4 Recognition of a Linear Motif of Bullous Pemphigoid Antigen BP230 Controls Its Recruitment to Hemidesmosomes.",
"author_list": "Manso JA, Gómez-Hernández M, Carabias A, Alonso-García N, García-Rubio I, Kreft M, Sonnenberg A, de Pereda JM",
"journal": "Structure",
"doi": "10.1016/j.str.2019.03.016",
"pmid": "31006587",
"published_date": "2019 Jun 4"
},
"status": "released",
"submitted_date": "2018-06-07",
"released_date": "2019-03-14"
},
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},
"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
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"type_of_source": "X-ray synchrotron",
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{
"long_name": "Integrin beta-4 (1436-1666) R1542E",
"short_name": "B4 CS-FnIII-3,4",
"sequence": "GSHM LPRDY\r\nSTLTSVSSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGG\r\nELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREEEGVITIESQVHPQSPLCP \r\nLPGSAFTLSTPSAPGPLVFTALSPDSLQLSWERPRRPNGDIVGYLVTCEMAQGGGPATAF\r\nRVDGDSPESRLTVPGLSENVPYKFKVQARTTEGFGPEREGIITIES",
"organism": "Homo sapiens",
"uniprot_code": "P16144",
"uniprot_range_first": 1436,
"uniprot_range_last": 1666,
"oligomerization": "monomer",
"molecular_type": "protein",
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"molecule_source": "biological",
"molecule_description": null
}
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"buffer": {
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"concentration_unit": "mM",
"comment": null,
"additive": "150 mM NaCl, 5% glycerol, 3 mM DTT",
"concentration": 20.0,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "Integrin beta4, fragment of the cytoplasmic region that includes the final part of the connecting segment and the third and fourth FnIII domains (FnIII-3,4). Point mutant R1542E",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "USAL",
"address": "Salamanca, Spain",
"full_name": "La Universidad de Salamanca",
"webpage": "http://www.usal.es"
}
],
"contributor_name": "Jose M",
"contributor_surname": "de Pereda",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2013-11-26",
"storage_temperature": null,
"cell_temperature": 10.0,
"exposure_time": 0.05,
"number_of_frames": 30,
"wavelength": 0.124,
"sample_detector_distance": 3.1,
"concentration_min": 0.9,
"concentration_max": 14.8,
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"flow_rate": null,
"s_min": 0.064,
"s_max": 4.45,
"total_exposure_time": null,
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},
"fits": [
{
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{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDDM8_fit1_model1_img.png",
"software": "DAMMIF",
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"model_title": null,
"type_of_model": "dummy",
"software_version": "r9988",
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"model_mw": 24.3,
"bead_radius": 1.5,
"log": "https://www.sasbdb.org/media/log_files/B460_R1542E_dammif_08.log",
"symmetry": null,
"comment": null,
"user": 26
}
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"software": "DAMMIF",
"chi_square_value": 1.322,
"p_value": 0.126579,
"fit_residual_plot": "SASDDM8_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDDM8_fit1.fir",
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"software_version": "r9988",
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"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDDM8_fit2_fixed_fit_img.png",
"software": "EOM/GAJOE",
"chi_square_value": 1.352,
"p_value": 0.126472,
"fit_residual_plot": "SASDDM8_fit2_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDDM8_fit2.fit",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/EOM_B460_R1542E_logFile_002_1.log",
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"pddf_software": "ATSAS GNOM",
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"description": "Synchrotron SAXS data from solutions of a fragment of the cytoplasmic region of the human integrin Beta4 subunit. This fragment includes the final part of a region named the \"connecting segment\" the third and fourth fibronectin type III domains (FnIII-3,4). The protein contains the point mutation R1542A. Samples at different solute concentration in the range 0.9 – 14.8 mg/ml were obtained by 2-fold serial dilution and were measured.",
"experiment_description": "Synchrotron SAXS data from solutions of the integrin beta4 fragment (point mutant R1542E) in 20 mM sodium phosphate 150 mM NaCl 5% glycerol 3 mM DTT, pH 7.5 were collected on the EMBL P12 beam line at the PETRA III storage ring (Hamburg, Germany) using a Pilatus 2M detector at a sample-detector distance of 3.1 m and at a wavelength of λ = 0.124 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 0.9 and 14.8 mg/ml were measured at 10°C. 30 successive 0.050 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve.",
"tags": [],
"intensity_unit": "1/cm",
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"guinier_point_first": 1,
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"pddf_point_first": null,
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"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDDM8_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-06-21T07:56:39.492710+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
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"status": "success",
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"finished_at": "2026-08-11T15:56:21.183056+00:00",
"source_last_modified": "2023-06-21T07:56:39.492710+02:00",
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