The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.
Every source field is expanded here, including empty values, list members and fields already shown above.
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{
"code": "SASDDM9",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "Structure of the lipoprotein lipase-GPIHBP1 complex that mediates plasma triglyceride hydrolysis.",
"publication": {
"title": "Structure of the lipoprotein lipase-GPIHBP1 complex that mediates plasma triglyceride hydrolysis.",
"author_list": "Birrane G, Beigneux AP, Dwyer B, Strack-Logue B, Kristensen KK, Francone OL, Fong LG, Mertens HDT, Pan CQ, Ploug M, Young SG, Meiyappan M",
"journal": "Proc Natl Acad Sci U S A",
"doi": "10.1073/pnas.1817984116",
"pmid": "30559189",
"published_date": "2018 Dec 17"
},
"status": "released",
"submitted_date": "2018-12-17",
"released_date": "2018-12-17"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDDM9.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDDM9.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDDM9_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDDM9_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDDM9_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDDM9_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDDM9.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus 2M",
"resolution": null
},
"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Lipoprotein lipase",
"short_name": "hLPL",
"sequence": "DQRRDFIDIESKFALRTPEDTAEDTCHLIPGV\r\nAESVATCHFNHSSKTFMVIHGWTVTGMYESWVPKLVAALYKREPDSNVIVVDWLSRAQEH\r\nYPVSAGYTKLVGQDVARFINWMEEEFNYPLDNVHLLGYSLGAHAAGIAGSLTNKKVNRIT\r\nGLDPAGPNFEYAEAPSRLSPDDADFVDVLHTFTRGSPGRSIGIQKPVGHVDIYPNGGTFQ\r\nPGCNIGEAIRVIAERGLGDVDQLVKCSHERSIHLFIDSLLNEENPSKAYRCSSKEAFEKG\r\nLCLSCRKNRCNNLGYEINKVRAKRSSKMYLKTRSQMPYKVFHYQVKIHFSGTESETHTNQ\r\nAFEISLYGTVAESENIPFTLPEVSTNKTYSFLIYTEVDIGELLMLKLKWKSDSYFSWSDW\r\nWSSPGFAIQKIRVKAGETQKKVIFCSREKVSHLQKGKAPAVFVKCHDKSLNKKSG",
"organism": "Homo sapiens",
"uniprot_code": "P06858",
"uniprot_range_first": 29,
"uniprot_range_last": 475,
"oligomerization": "dimer",
"molecular_type": "protein",
"uniprot_sequence": "MESKALLVLTLAVWLQSLTASRGGVAAADQRRDFIDIESKFALRTPEDTAEDTCHLIPGV\nAESVATCHFNHSSKTFMVIHGWTVTGMYESWVPKLVAALYKREPDSNVIVVDWLSRAQEH\nYPVSAGYTKLVGQDVARFINWMEEEFNYPLDNVHLLGYSLGAHAAGIAGSLTNKKVNRIT\nGLDPAGPNFEYAEAPSRLSPDDADFVDVLHTFTRGSPGRSIGIQKPVGHVDIYPNGGTFQ\nPGCNIGEAIRVIAERGLGDVDQLVKCSHERSIHLFIDSLLNEENPSKAYRCSSKEAFEKG\nLCLSCRKNRCNNLGYEINKVRAKRSSKMYLKTRSQMPYKVFHYQVKIHFSGTESETHTNQ\nAFEISLYGTVAESENIPFTLPEVSTNKTYSFLIYTEVDIGELLMLKLKWKSDSYFSWSDW\nWSSPGFAIQKIRVKAGETQKKVIFCSREKVSHLQKGKAPAVFVKCHDKSLNKKSG",
"mw": 50.323,
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"number_molecules": 2,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
},
{
"long_name": "Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1",
"short_name": "GPIHBP1",
"sequence": "QTQQEEEEEDEDHGPDDYDEEDEDEVEEEETNRLPGGRSR\r\nVLLRCYTCKSLPRDERCNLTQNCSHGQTCTTLIAHGNTESGLLTTHSTWCTDSCQPITKT\r\nVEGTQVTMTCCQSSLCNVPPWQSSRVQDPTG",
"organism": "Homo sapiens",
"uniprot_code": null,
"uniprot_range_first": null,
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"oligomerization": "dimer",
"molecular_type": "protein",
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"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "10 mM BisTris, 150 mM NaCl, 4 mM CaCl2, 10% glycerol",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.4,
"deuteration": null
},
"purity_method": null,
"name": "lipoprotein lipase–GPIHBP1 complex",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "EMBL-Hamburg",
"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
"full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
"webpage": "http://www.embl-hamburg.de/index.php"
}
],
"contributor_name": "Haydyn",
"contributor_surname": "Mertens",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2017-12-02",
"storage_temperature": 25.0,
"cell_temperature": 25.0,
"exposure_time": 0.05,
"number_of_frames": 20,
"wavelength": 0.124,
"sample_detector_distance": 3.1,
"concentration_min": null,
"concentration_max": 0.72,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.092,
"s_max": 5.088,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
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{
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"software": "DAMMIF",
"pdb_link": [],
"model_title": null,
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"model_mw": 203.0,
"bead_radius": 2.2,
"log": "https://www.sasbdb.org/media/log_files/modelP2_8_14.log",
"symmetry": "P2",
"comment": null,
"user": 12
},
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDDM9_fit1_model2_img.png",
"software": "DAMFILT",
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"model_title": null,
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"software_version": "5.0 r9988",
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"log": null,
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}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDDM9_fit1_fit_img.png",
"software": "DAMMIF",
"chi_square_value": 1.067,
"p_value": 0.382446,
"fit_residual_plot": "SASDDM9_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDDM9_fit1.fir",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/modelP2_8_14.log",
"software_version": "2.8.1",
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": "1/cm",
"experimental_mw": 152.0,
"experimental_mw_error": null,
"guinier_i0_mw": 151.9,
"guinier_i0_mw_error": 10.0,
"porod_mw": 188.0,
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"pddf_i0": 0.07501,
"pddf_i0_error": 0.01,
"guinier_i0": 0.074,
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"pddf_rg": 5.598,
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"guinier_rg": 5.47,
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"pddf_dmax": 19.0,
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"porod_volume": 319.0,
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"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 1,
"guinier_point_last": 55,
"pddf_point_first": null,
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"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDDM9_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-06-21T07:56:39.492710+02:00",
"bragg_peak": []
}
