SASDDS8

Neural/ectodermal development factor IMP-L2

Data type: SASBDB experimental data Status: Published Curve type: Merged Last updated: 2019-12-06T13:07:15.624532+01:00
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1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · Neural/ectodermal development factor IMP-L2

Concentration3.2 – 12.8 Buffer / pHphosphate buffered saline / 7.4
Experimental temperature25.0 Facility / beamlineESRF / ID14-3
Wavelength0.093 nmExposure10.0 s × 10

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
Neural/ectodermal development factor IMP-L2
View sequence
MEAKMNLHVCALALLLFGSIATVRGRAVDLVDDSNDVDNSIEAEEEKPRNRAFEADWLKFTKTPPTKLQQADGATIEIVCEMMGSQVPSIQWVVGHLPRSELDDLDSNQVAEEAPSAIVRVRSSHIIDHVLSEARTYTCVGRTGSKTIYASTVVHPPRSSRLTPEKTYPGAQKPRIIYTEKTHLDLMGSNIQLPCRVHARPRAEITWLNNENKEIVQGHRHRVLANGDLLISEIKWEDMGNYKCIARNVVGKDTADTFVYPVLNEED
proteinDrosophila melanogasterQ09024—–—dimerMolecule count 229.895 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
11143[3]0.074043–5.51548 1/nmHas uncertainty columnMissing 00sasbdb/entries/s8/sasdds8/source/SASDDS8.dat
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2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)12.0—nm
i0Guinier40.910.038arbitrary
mwExperimental63.0—kDa
porod_volumePorod93.0—nm³
rgGuinier3.070.02nm

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

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3. Source Fits and Models Source Fits & Models

This entry has no source fit record.

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4. Source File Index Source Files

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5. Experiment Description and Publication Experiment & Publication

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6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer namephosphate buffered salineBuffer concentration—
pH7.4Additives—
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2011-11-20Storage / measurement temperature5.0 / 25.0
Exposure time10.0Frames10
Wavelength0.093Sample-to-detector distance2.43
SourceX-ray synchrotronDetectorPilatus 1M
Facility / beamlineESRF / ID14-3 · Grenoble, France
q range0.074 – 5.515Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot

Downloadable Files

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All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:134 field values
Field pathRaw value
codeSASDDS8
statusPublished
type_of_curveMerged
angular_unit1/nm
project.titleStructures of insect Imp-L2 suggest an alternative strategy for regulating the bioavailability of insulin-like hormones.
project.publication.titleStructures of insect Imp-L2 suggest an alternative strategy for regulating the bioavailability of insulin-like hormones.
project.publication.author_listRoed NK, Viola CM, Kristensen O, Schluckebier G, Norrman M, Sajid W, Wade JD, Andersen AS, Kristensen C, Ganderton TR, Turkenburg JP, De Meyts P, Brzozowski AM
project.publication.journalNat Commun
project.publication.doi10.1038/s41467-018-06192-3
project.publication.pmid30242155
project.publication.published_date2018 Sep 21
project.statusreleased
project.submitted_date2018-06-21
project.released_date2018-12-03
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experiment.instrument.detector.resolution172.0
experiment.instrument.nameESRF
experiment.instrument.cityGrenoble
experiment.instrument.countryFrance
experiment.instrument.beamline_nameID14-3
experiment.instrument.beam_geometry
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experiment.sample.molecule[0].long_nameNeural/ectodermal development factor IMP-L2
experiment.sample.molecule[0].short_nameImp-L2 IBP
experiment.sample.molecule[0].sequenceMEAKMNLHVCALALLLFGSIATVRGRAVDLVDDSNDVDNSIEAEEEKPRNRAFEADWLKF TKTPPTKLQQADGATIEIVCEMMGSQVPSIQWVVGHLPRSELDDLDSNQVAEEAPSAIVR VRSSHIIDHVLSEARTYTCVGRTGSKTIYASTVVHPPRSSRLTPEKTYPGAQKPRIIYTE KTHLDLMGSNIQLPCRVHARPRAEITWLNNENKEIVQGHRHRVLANGDLLISEIKWEDMG NYKCIARNVVGKDTADTFVYPVLNEED
experiment.sample.molecule[0].organismDrosophila melanogaster
experiment.sample.molecule[0].uniprot_codeQ09024
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationdimer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMEAKMNLHVCALALLLFGSIATVRGRAVDLVDDSNDVDNSIEAEEEKPRNRAFEADWLKF TKTPPTKLQQADGATIEIVCEMMGSQVPSIQWVVGHLPRSELDDLDSNQVAEEAPSAIVR VRSSHIIDHVLSEARTYTCVGRTGSKTIYASTVVHPPRSSRLTPEKTYPGAQKPRIIYTE KTHLDLMGSNIQLPCRVHARPRAEITWLNNENKEIVQGHRHRVLANGDLLISEIKWEDMG NYKCIARNVVGKDTADTFVYPVLNEED
experiment.sample.molecule[0].mw29.895
experiment.sample.molecule[0].total_mw59.79
experiment.sample.molecule[0].number_molecules2
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experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.namephosphate buffered saline
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
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experiment.sample.buffer.pkanull
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experiment.sample.purity_methodnull
experiment.sample.nameNeural/ectodermal development factor IMP-L2
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressDenmark
experiment.contributor[0].affiliation[0].full_nameNovo Nordisk A/S
experiment.contributor[0].affiliation[0].webpagehttps://www.novonordisk.com/
experiment.contributor[0].contributor_nameMathias
experiment.contributor[0].contributor_surnameNorrman
experiment.contributor[0].orcid
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experiment_descriptionSynchrotron SAXS data from solutions of neural/ectodermal development factor IMP-L2 in phosphate buffered saline, pH 7.4 were collected on the ID14-3 beam line at the ESRF (Grenoble, France) using a Pilatus 1M detector at a sample-detector distance of 2.4 m and at a wavelength of λ = 0.093 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 3.2 and 12.8 mg/ml were measured at 25°C. 10 successive 10 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve.
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last_modified2019-12-06T13:07:15.624532+01:00
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View the complete summary.json source
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    "title": "Structures of insect Imp-L2 suggest an alternative strategy for regulating the bioavailability of insulin-like hormones.",
    "publication": {
      "title": "Structures of insect Imp-L2 suggest an alternative strategy for regulating the bioavailability of insulin-like hormones.",
      "author_list": "Roed NK, Viola CM, Kristensen O, Schluckebier G, Norrman M, Sajid W, Wade JD, Andersen AS, Kristensen C, Ganderton TR, Turkenburg JP, De Meyts P, Brzozowski AM",
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View the complete manifest.json source
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