查看完整 summary.json 原文
{
"code": "SASDDW4",
"status": "Published",
"type_of_curve": "SEC-SAS",
"angular_unit": "1/nm",
"project": {
"title": "Molecular architecture of the multifunctional collagen lysyl hydroxylase and glycosyltransferase LH3.",
"publication": {
"title": "Molecular architecture of the multifunctional collagen lysyl hydroxylase and glycosyltransferase LH3.",
"author_list": "Scietti L, Chiapparino A, De Giorgi F, Fumagalli M, Khoriauli L, Nergadze S, Basu S, Olieric V, Cucca L, Banushi B, Profumo A, Giulotto E, Gissen P, Forneris F",
"journal": "Nat Commun",
"doi": "10.1038/s41467-018-05631-5",
"pmid": "30089812",
"published_date": "2018 Aug 8"
},
"status": "released",
"submitted_date": "2018-03-09",
"released_date": "2018-08-13"
},
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"experiment": {
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"detector": {
"type": "Dectris",
"name": "Pilatus 1M",
"resolution": 172.0
},
"name": "ESRF",
"city": "Grenoble",
"country": "France",
"beamline_name": "BM29",
"beam_geometry": "",
"type_of_source": "X-ray synchrotron",
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},
"sample": {
"molecule": [
{
"long_name": "Procollagen lysyl hydroxylase LH3",
"short_name": "LH3",
"sequence": "SSDRPRGRDPVNPEKLLVITVATAETEGYLRFLRSAEFFNYTVRTLGLGEEWRGGDVARTV\r\nGGGQKVRWLKKEMEKYADREDMIIMFVDSYDVILAGSPTELLKKFVQSGSRLLFSAESFC\r\nWPEWGLAEQYPEVGTGKRFLNSGGFIGFATTIHQIVRQWKYKDDDDDQLFYTRLYLDPGL\r\nREKLSLNLDHKSRIFQNLNGALDEVVLKFDRNRVRIRNVAYDTLPIVVHGNGPTKLQLNY\r\nLGNYVPNGWTPEGGCGFCNQDRRTLPGGQPPPRVFLAVFVEQPTPFLPRFLQRLLLLDYP\r\nPDRVTLFLHNNEVFHEPHIADSWPQLQDHFSAVKLVGPEEALSPGEARDMAMDLCRQDPE\r\nCEFYFSLDADAVLTNLQTLRILIEENRKVIAPMLSRHGKLWSNFWGALSPDEYYARSEDY\r\nVELVQRKRVGVWNVPYISQAYVIRGDTLRMELPQRDVFSGSDTDPDMAFCKSFRDKGIFL\r\nHLSNQHEFGRLLATSRYDTEHLHPDLWQIFDNPVDWKEQYIHENYSRALEGEGIVEQPCP\r\nDVYWFPLLSEQMCDELVAEMEHYGQWSGGRHEDSRLAGGYENVPTVDIHMKQVGYEDQWL\r\nQLLRTYVGPMTESLFPGYHTKARAVMNFVVRYRPDEQPSLRPHHDSSTFTLNVALNHKGL\r\nDYEGGGCRFLRYDCVISSPRKGWALLHPGRLTHYHEGLPTTWGTRYIMVSFVDPAAA",
"organism": "Homo sapiens",
"uniprot_code": "O60568",
"uniprot_range_first": 25,
"uniprot_range_last": 738,
"oligomerization": "dimer",
"molecular_type": "protein",
"uniprot_sequence": "MTSSGPGPRFLLLLPLLLPPAASASDRPRGRDPVNPEKLLVITVATAETEGYLRFLRSAE\nFFNYTVRTLGLGEEWRGGDVARTVGGGQKVRWLKKEMEKYADREDMIIMFVDSYDVILAG\nSPTELLKKFVQSGSRLLFSAESFCWPEWGLAEQYPEVGTGKRFLNSGGFIGFATTIHQIV\nRQWKYKDDDDDQLFYTRLYLDPGLREKLSLNLDHKSRIFQNLNGALDEVVLKFDRNRVRI\nRNVAYDTLPIVVHGNGPTKLQLNYLGNYVPNGWTPEGGCGFCNQDRRTLPGGQPPPRVFL\nAVFVEQPTPFLPRFLQRLLLLDYPPDRVTLFLHNNEVFHEPHIADSWPQLQDHFSAVKLV\nGPEEALSPGEARDMAMDLCRQDPECEFYFSLDADAVLTNLQTLRILIEENRKVIAPMLSR\nHGKLWSNFWGALSPDEYYARSEDYVELVQRKRVGVWNVPYISQAYVIRGDTLRMELPQRD\nVFSGSDTDPDMAFCKSFRDKGIFLHLSNQHEFGRLLATSRYDTEHLHPDLWQIFDNPVDW\nKEQYIHENYSRALEGEGIVEQPCPDVYWFPLLSEQMCDELVAEMEHYGQWSGGRHEDSRL\nAGGYENVPTVDIHMKQVGYEDQWLQLLRTYVGPMTESLFPGYHTKARAVMNFVVRYRPDE\nQPSLRPHHDSSTFTLNVALNHKGLDYEGGGCRFLRYDCVISSPRKGWALLHPGRLTHYHE\nGLPTTWGTRYIMVSFVDP",
"mw": 90.0,
"total_mw": 180.0,
"number_molecules": 2,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "25 mM HEPES, 200 mM NaCl",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 8.0,
"deuteration": null
},
"purity_method": null,
"name": "Procollagen lysyl hydroxylase LH3 measured using SEC-SAXS",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "Italy",
"full_name": "University of Pavia",
"webpage": "http://wcm-3.unipv.it"
}
],
"contributor_name": "Federico",
"contributor_surname": "Forneris",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2018-02-28",
"storage_temperature": 20.0,
"cell_temperature": 20.0,
"exposure_time": 1.0,
"number_of_frames": 75,
"wavelength": 0.09919,
"sample_detector_distance": 2.87,
"concentration_min": null,
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"s_min": 0.051,
"s_max": 4.928,
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},
"fits": [
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"software": "GASBOR",
"pdb_link": [],
"model_title": null,
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"model_mw": null,
"bead_radius": 1.9,
"log": null,
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"comment": null,
"user": 294
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDDW4_fit3_fit_img.png",
"software": "GASBOR",
"chi_square_value": 1.85,
"p_value": 0.0,
"fit_residual_plot": "SASDDW4_fit3_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDDW4_fit3.fir",
"fit_log": null,
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}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": "The sample was injected at a load concentration of 3.5 mg/mL. The SEC column used was a Superdex 200 PC 3.2/300 Increase (GE Healthcare) at a flow rate 0.075 mL/min.",
"experiment_description": "Synchrotron SAXS data from solutions of procollagen lysyl hydroxylase LH3 in 25 mM HEPES, 200 mM NaCl, pH 8 were measured at 20°C using SEC-SAXS collected on the BM29 beam line at the ESRF storage ring (Grenoble, France) equipped with a Pilatus 1M detector at a sample-detector distance of 2.9 m and at a wavelength of λ = 0.09919 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 3.50 mg/ml was injected onto the column. 75 successive 1 second frames were collected through the sample elution peak and processed using CHROMIXS that included the identification and subtraction of an appropriate solvent-blank.",
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 180.0,
"experimental_mw_error": null,
"guinier_i0_mw": 184.0,
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"pddf_i0": 62.4,
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"guinier_i0_error": 0.12,
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"pddf_dmax": 20.96,
"pddf_dmax_error": null,
"porod_volume": 268.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 9,
"guinier_point_last": 43,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDDW4_datloglog_img.png",
"symmetry": null,
"last_modified": "2019-12-06T13:07:15.624532+01:00",
"bragg_peak": []
}查看完整 manifest.json 原文
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"started_at": "2026-08-11T14:32:50.827778+00:00",
"finished_at": "2026-08-11T14:32:59.773566+00:00",
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