SASDE27

Gamma-crystallin S monomer

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2019-12-06T13:07:15.624532+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Gamma-crystallin S monomer

浓度— – 3.0 缓冲液 / pH20 mM sodium phosphate / 7.0
实验温度25.0 设备 / 束线Australian Nuclear Science and Technology Organisation/Australian Centre for Neutron Scattering / Bruker Nanostar II
波长0.1541 nm曝光3600.0 s × 4

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Gamma-crystallin S
查看序列
>SP|P22914|CRYGS_HUMANGAMMA-CRYSTALLINSOS=HOMOSAPIENSOX=9606GN=CRYGSPE=1SV=4MSKTGTKITFYEDKNFQGRRYDCDCDCADFHTYLSRCNSIKVEGGTWAVYERPNFAGYMYILPQGEYPEYQRWMGLNDRLSSCRAVHLPSGGQYKIQIFEKGDFSGQMYETTEDCPSIMEQFHMREIHSCKVLEGVWIFYELPNYRGRQYLLDKKEYRKPIDWGAASPAVQSFRRIVE
proteinHomo sapiensP22914—–—monomer分子数 121.007 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1533[3]0.012802–0.391033 1/A含误差列缺失 011sasbdb/entries/27/sasde27/source/SASDE27.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)5.9—Å
i0Guinier131.691.0arbitrary
i0P(r)133.50.5arbitrary
mwExperimental15.8—kDa
mwGuinier I(0)15.83.3kDa
mwPorod17.0—kDa
porod_volumePorod27.0—ų
rgGuinier1.7960.03Å
rgP(r)1.85—Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称20 mM sodium phosphate缓冲液浓度—
pH7.0添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2018-02-23储存 / 测量温度4.0 / 25.0
曝光时间3600.0帧数4
波长0.1541样品-探测器距离0.73
光源X-ray in house探测器Bruker HI-STAR
机构 / 束线Australian Nuclear Science and Technology Organisation/Australian Centre for Neutron Scattering / Bruker Nanostar II · Sydney, Australia
q 范围0.128 – 3.91样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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full_entry_zipsasbdb/entries/27/sasde27/source/SASDE27.zipdownloaded78864bddc02f985f743c6a168346b01680c77cbebea45043df1a8335a438a10982a4c下载查看原文件源站
pddfsasbdb/entries/27/sasde27/source/SASDE27.outdownloaded266622d9417cdc578392afe792359673800d877a3d6708d1984fb9193d4b05501fc64下载查看原文件源站
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curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(4 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:159 个字段值
字段路径原始值
codeSASDE27
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleThe structure and stability of the disulfide-linked γS-crystallin dimer provide insight into oxidation products associated with lens cataract formation.
project.publication.titleThe structure and stability of the disulfide-linked γS-crystallin dimer provide insight into oxidation products associated with lens cataract formation.
project.publication.author_listThorn DC, Grosas AB, Mabbitt PD, Ray NJ, Jackson CJ, Carver JA
project.publication.journalJ Mol Biol
project.publication.doi10.1016/j.jmb.2018.12.005
project.publication.pmid30552875
project.publication.published_date2018 Dec 12
project.statusreleased
project.submitted_date2018-10-29
project.released_date2018-12-18
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intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDE27.txt
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experiment.instrument.detector.typemultiwire
experiment.instrument.detector.nameBruker HI-STAR
experiment.instrument.detector.resolution0.0
experiment.instrument.nameAustralian Nuclear Science and Technology Organisation/Australian Centre for Neutron Scattering
experiment.instrument.citySydney
experiment.instrument.countryAustralia
experiment.instrument.beamline_nameBruker Nanostar II
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray in house
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameGamma-crystallin S
experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequence>sp|P22914|CRYGS_HUMAN Gamma-crystallin S OS=Homo sapiens OX=9606 GN=CRYGS PE=1 SV=4 MSKTGTKITFYEDKNFQGRRYDCDCDCADFHTYLSRCNSIKVEGGTWAVYERPNFAGYMY ILPQGEYPEYQRWMGLNDRLSSCRAVHLPSGGQYKIQIFEKGDFSGQMYETTEDCPSIME QFHMREIHSCKVLEGVWIFYELPNYRGRQYLLDKKEYRKPIDWGAASPAVQSFRRIVE
experiment.sample.molecule[0].organismHomo sapiens
experiment.sample.molecule[0].uniprot_codeP22914
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMSKTGTKITFYEDKNFQGRRYDCDCDCADFHTYLSRCNSIKVEGGTWAVYERPNFAGYMY ILPQGEYPEYQRWMGLNDRLSSCRAVHLPSGGQYKIQIFEKGDFSGQMYETTEDCPSIME QFHMREIHSCKVLEGVWIFYELPNYRGRQYLLDKKEYRKPIDWGAASPAVQSFRRIVE
experiment.sample.molecule[0].mw21.007
experiment.sample.molecule[0].total_mw21.007
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name20 mM sodium phosphate
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameGamma-crystallin S monomer
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressCanberra, Australia
experiment.contributor[0].affiliation[0].full_nameAustralian National University
experiment.contributor[0].affiliation[0].webpagehttps://www.anu.edu.au/
experiment.contributor[0].contributor_nameAidan
experiment.contributor[0].contributor_surnameGrosas
experiment.contributor[0].orcid
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2018-02-23
experiment.storage_temperature4.0
experiment.cell_temperature25.0
experiment.exposure_time3600.0
experiment.number_of_frames4
experiment.wavelength0.1541
experiment.sample_detector_distance0.73
experiment.concentration_minnull
experiment.concentration_max3.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.128
experiment.s_max3.91
experiment.total_exposure_timenull
experiment.seccolumnnull
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fits[0].models[0].softwareChimera
fits[0].models[0].pdb_link[0].pdb_code2m3t
fits[0].models[0].pdb_link[0].ext_code2M3T
fits[0].models[0].pdb_link[0].ext_typepdb
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fits[0].softwareCRYSOL
fits[0].chi_square_value1.425
fits[0].p_value0.229414
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fits[0].description
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pddf_softwareATSAS GNOM
pddf_software_version4.6
i0_calibration_standardnull
descriptionnull
experiment_descriptionSAXS data from solutions of gamma-crystallin S monomer in 20 mM sodium phosphate, pH 7 were collected on the Bruker Nanostar II instrument at the Australian Nuclear Science and Technology Organisation/Australian Centre for Neutron Scattering (ANSTO/ACNS, Sydney, Australia) using a multiwire Bruker Hi-Star detector at a sample-detector distance of 0.7 m and at a wavelength of λ = 0.1541 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 3.00 mg/ml was measured at 25°C. Four successive 3600 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.
tags[]
intensity_unitarbitrary
experimental_mw15.8
experimental_mw_errornull
guinier_i0_mw15.8
guinier_i0_mw_error3.3
porod_mw17.0
porod_mw_errornull
pddf_i0133.5
pddf_i0_error0.5
guinier_i0131.69
guinier_i0_error1.0
pddf_rg1.85
pddf_rg_errornull
guinier_rg1.796
guinier_rg_error0.03
pddf_dmax5.9
pddf_dmax_errornull
porod_volume27.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first11
guinier_point_last65
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDE27_datloglog_img.png
symmetrynull
last_modified2019-12-06T13:07:15.624532+01:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDE27
statussuccess
started_at2026-08-11T15:20:13.279894+00:00
finished_at2026-08-11T15:20:21.483240+00:00
source_last_modified2019-12-06T13:07:15.624532+01:00
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查看完整 summary.json 原文
{
  "code": "SASDE27",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "The structure and stability of the disulfide-linked γS-crystallin dimer provide insight into oxidation products associated with lens cataract formation.",
    "publication": {
      "title": "The structure and stability of the disulfide-linked γS-crystallin dimer provide insight into oxidation products associated with lens cataract formation.",
      "author_list": "Thorn DC, Grosas AB, Mabbitt PD, Ray NJ, Jackson CJ, Carver JA",
      "journal": "J Mol Biol",
      "doi": "10.1016/j.jmb.2018.12.005",
      "pmid": "30552875",
      "published_date": "2018 Dec 12"
    },
    "status": "released",
    "submitted_date": "2018-10-29",
    "released_date": "2018-12-18"
  },
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          "long_name": "Gamma-crystallin S",
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      "deuteration": null,
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    },
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            "address": "Canberra, Australia",
            "full_name": "Australian National University",
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查看完整 manifest.json 原文
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