Mothers against decapentaplegic homolog 5 - Smad5 MH1

{
  "code": "SASDE32",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "Unveiling the dimer/monomer propensities of Smad MH1-DNA complexes",
    "publication": {
      "title": "Unveiling the dimer/monomer propensities of Smad MH1-DNA complexes",
      "author_list": "Ruiz L, Kaczmarska Z, Gomes T, Aragón E, Torner C, Freier R, Bagiński B, Martin-Malpartida P, de Martin Garrido N, Márquez J, Cordeiro T, Pluta R, Macias M",
      "journal": null,
      "doi": "10.1101/833319",
      "pmid": null,
      "published_date": "2019 Nov 07"
    },
    "status": "released",
    "submitted_date": "2018-07-24",
    "released_date": "2019-11-25"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDE32.dat",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDE32.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDE32_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDE32_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDE32_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDE32_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDE32.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": "Dectris",
        "name": "Pilatus 1M",
        "resolution": 172.0
      },
      "name": "ESRF",
      "city": "Grenoble",
      "country": "France",
      "beamline_name": "BM29",
      "beam_geometry": "",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Mothers against decapentaplegic homolog 5",
          "short_name": "Smad5 MH1",
          "sequence": "GPSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSSPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDICEFPFGSKQKEVCINPYHYKRVESPVLPP",
          "organism": "Homo sapiens",
          "uniprot_code": "Q99717",
          "uniprot_range_first": 9,
          "uniprot_range_last": 138,
          "oligomerization": "unknown",
          "molecular_type": "protein",
          "uniprot_sequence": "MTSMASLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSSPG\nQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDICEFPFGSKQKE\nVCINPYHYKRVESPVLPPVLVPRHNEFNPQHSLLVQFRNLSHNEPHMPQNATFPDSFHQP\nNNTPFPLSPNSPYPPSPASSTYPNSPASSGPGSPFQLPADTPPPAYMPPDDQMGQDNSQP\nMDTSNNMIPQIMPSISSRDVQPVAYEEPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFT\nDPSNNKSRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNC\nNFHHGFHPTTVCKIPSSCSLKIFNNQEFAQLLAQSVNHGFEAVYELTKMCTIRMSFVKGW\nGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPLNPISSVS",
          "mw": 15.079,
          "total_mw": 15.079,
          "number_molecules": 0,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        }
      ],
      "buffer": {
        "name": "20 mM Tris, 150 mM NaCl",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.2,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Mothers against decapentaplegic homolog 5 - Smad5 MH1",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": "IRB",
            "address": "Barcelona, Spain",
            "full_name": "Institute for Research in Biomedicine in Barcelona (IRB)",
            "webpage": "https://www.irbbarcelona.org"
          }
        ],
        "contributor_name": "Tiago",
        "contributor_surname": "Lopes",
        "orcid": ""
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2018-02-14",
    "storage_temperature": 10.0,
    "cell_temperature": 10.0,
    "exposure_time": 1.0,
    "number_of_frames": 10,
    "wavelength": 0.09919,
    "sample_detector_distance": 2.87,
    "concentration_min": null,
    "concentration_max": 10.0,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.281,
    "s_max": 4.918,
    "total_exposure_time": null,
    "seccolumn": null
  },
  "fits": [],
  "estimated_volume_method": null,
  "pddf_software": "ScÅtter",
  "pddf_software_version": null,
  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": "Synchrotron SAXS data from solutions of mothers against decapentaplegic homolog 5 (Smad5 MH1) in 20 mM Tris 150 mM NaCl, pH 7.2 were collected on the BM29 beam line at the ESRF (Grenoble, France) using a Pilatus 1M detector at a sample-to-detector distance of 2.87 m and an X-ray wavelength, λ, of 0.09919 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 10.00 mg/ml was measured at 10°C. 10 successive 1 s frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The data is recorded from a sample in monomer-dimer equilibrium.",
  "tags": [],
  "intensity_unit": "arbitrary",
  "experimental_mw": 18.55,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": null,
  "porod_mw_error": null,
  "pddf_i0": 14.11,
  "pddf_i0_error": 0.02,
  "guinier_i0": 15.75,
  "guinier_i0_error": 0.02,
  "pddf_rg": 1.782,
  "pddf_rg_error": 0.04,
  "guinier_rg": 1.853,
  "guinier_rg_error": 0.05,
  "pddf_dmax": 6.6,
  "pddf_dmax_error": null,
  "porod_volume": 32.0,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": null,
  "guinier_point_last": null,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDE32_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2021-02-27T12:29:13.920744+01:00",
  "bragg_peak": []
}

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