查看完整 summary.json 原文
{
"code": "SASDE67",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "Crystal Structure of Aldehyde Dehydrogenase 16 Reveals Trans-Hierarchical Structural Similarity and a New Dimer.",
"publication": {
"title": "Crystal Structure of Aldehyde Dehydrogenase 16 Reveals Trans-Hierarchical Structural Similarity and a New Dimer.",
"author_list": "Liu LK, Tanner JJ",
"journal": "J Mol Biol",
"doi": "10.1016/j.jmb.2018.11.030",
"pmid": "30529746",
"published_date": "2018 Dec 7"
},
"status": "released",
"submitted_date": "2018-10-30",
"released_date": "2018-12-13"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDE67.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDE67.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDE67_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDE67_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDE67_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDE67_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDE67.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus3 X 2M",
"resolution": 172.0
},
"name": "Advanced Light Source (ALS)",
"city": "Berkeley, CA",
"country": "USA",
"beamline_name": "12.3.1 (SIBYLS)",
"beam_geometry": "",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Aldehyde dehydrogenase 16 from Loktanella sp.",
"short_name": "LsALDH16",
"sequence": "MTVKEIFETMDYGPAPESAKEAYAWLAEKGDFGHFIGGAWTAPGDLFATVNPATGQTLAQ\r\nVSQATQADVDAAVKAARKAQPAWAKDGAARARVLYALARLLQKHARLFAVLETLDNGKPI\r\nREARDIDVPLAQRHFYHHAGYAQLMGTEMPDRAPLGVCGQVIPWNFPLLMLAWKIAPALA\r\nMGNTVVLKPAEWTPLTALLFADICGQAGVPAGVVNIVTGDGAVGEMIVTAQVDKVAFTGS\r\nTAVGRRIREATAGTGKALSLELGGKGPYVVCDDADIDSAVEGLVDAIWFNQGQVCCAGSR\r\nLLVQEGIADVFHAKLRARMDSLRIGDPLDKCIDIGAMVHPDQLARVRDMVAANTDGEVYQ\r\nTAVPAGCYYPPTLISGLAPASPLMQQEIFGPVLVSTTFRTPAEAVEIANNTAYGLAASVW\r\nSENVNLALDLAPKLVAGIVWINGTNMMDAAAPFGGVRESGFGREGGWEGLAGYTRPAIAT\r\nKSPAAVAAYTGDGAADGLDRTAKLYIGGKQTRPDGGYSRAVYGPKGKLLGHASLSNRKDL\r\nRNAVEAMNAASGWSRTTGHLRAQILYFIGENLSARADEFANRIKDMTGKDGKAEVAASID\r\nRLFSAAAWADKYDGQVKGVPLRGVALAMKEPVGKIGILCPDAAPLLGLVSLMAPAIAMGN\r\nRVTLAASEAFPLAATDFYQVLDTSDVPAGVVNILTGAHADLAEPMARHLDLDAVWGLSGH\r\nAQVIEAASAGNLKRSWTGPFDPAHDHTRDILSHATEVKTIWVPYGA",
"organism": "Loktanella sp. 3ANDIMAR09",
"uniprot_code": "A0A0Q3EUQ3",
"uniprot_range_first": 1,
"uniprot_range_last": 766,
"oligomerization": "dimer",
"molecular_type": "protein",
"uniprot_sequence": "MTVKEIFETMDYGPAPESAKEAYAWLAEKGDFGHFIGGAWTAPGDLFATVNPATGQTLAQ\nVSQATQADVDAAVKAARKAQPAWAKDGAARARVLYALARLLQKHARLFAVLETLDNGKPI\nREARDIDVPLAQRHFYHHAGYAQLMGTEMPDRAPLGVCGQVIPWNFPLLMLAWKIAPALA\nMGNTVVLKPAEWTPLTALLFADICGQAGVPAGVVNIVTGDGAVGEMIVTAQVDKVAFTGS\nTAVGRRIREATAGTGKALSLELGGKGPYVVCDDADIDSAVEGLVDAIWFNQGQVCCAGSR\nLLVQEGIADVFHAKLRARMDSLRIGDPLDKCIDIGAMVHPDQLARVRDMVAANTDGEVYQ\nTAVPAGCYYPPTLISGLAPASPLMQQEIFGPVLVSTTFRTPAEAVEIANNTAYGLAASVW\nSENVNLALDLAPKLVAGIVWINGTNMMDAAAPFGGVRESGFGREGGWEGLAGYTRPAIAT\nKSPAAVAAYTGDGAADGLDRTAKLYIGGKQTRPDGGYSRAVYGPKGKLLGHASLSNRKDL\nRNAVEAMNAASGWSRTTGHLRAQILYFIGENLSARADEFANRIKDMTGKDGKAEVAASID\nRLFSAAAWADKYDGQVKGVPLRGVALAMKEPVGKIGILCPDAAPLLGLVSLMAPAIAMGN\nRVTLAASEAFPLAATDFYQVLDTSDVPAGVVNILTGAHADLAEPMARHLDLDAVWGLSGH\nAQVIEAASAGNLKRSWTGPFDPAHDHTRDILSHATEVKTIWVPYGA",
"mw": 80.704,
"total_mw": 161.408,
"number_molecules": 2,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "20 mM Tris-HCl, 100 mM NaCl, 2.0% glycerol, 0.5 mM Tris(3-hydroxypropyl)phosphine",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 8.0,
"deuteration": null
},
"purity_method": null,
"name": "Aldehyde dehydrogenase 16 from Loktanella sp. (LsALDH16): 6 mg/ml",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "Mizzou",
"address": "Columbia, MO, USA",
"full_name": "University of Missouri-Columbia",
"webpage": "http://missouri.edu/"
}
],
"contributor_name": "Li-Kai",
"contributor_surname": "Liu",
"orcid": "https://orcid.org/0000-0001-9759-7250"
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2017-12-13",
"storage_temperature": null,
"cell_temperature": 10.0,
"exposure_time": 0.3,
"number_of_frames": 32,
"wavelength": 0.127,
"sample_detector_distance": 1.5,
"concentration_min": null,
"concentration_max": 6.0,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.12,
"s_max": 5.642,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDE67_fit1_model1_img.png",
"software": "PyMOL",
"pdb_link": [],
"model_title": null,
"type_of_model": "atomic",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDE67_fit1_model1.pdb",
"model_mw": 157.1,
"bead_radius": null,
"log": null,
"symmetry": null,
"comment": null,
"user": 386
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/Ls16A1_refine_93dimer_E7_Ls16A1_medhi_fit_img.png",
"software": "FoXS",
"chi_square_value": 0.879008,
"p_value": 0.0,
"fit_residual_plot": "Ls16A1_refine_93dimer_E7_Ls16A1_medhi_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDE67_fit1.fit",
"fit_log": null,
"software_version": null,
"description": ""
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": null,
"experiment_description": "Synchrotron SAXS data from solutions of aldehyde dehydrogenase 16 from Loktanella sp. (LsALDH16) in 20 mM Tris-HCl, 100 mM NaCl, 2.0% glycerol, 0.5 mM Tris(3-hydroxypropyl)phosphine, pH 8 were collected on the 12.3.1 (SIBYLS) beam line at the Advanced Light Source (ALS; Berkeley, CA, USA) using a Pilatus3 X 2M detector at a sample-detector distance of 1.5 m and at a wavelength of λ = 0.127 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 6.00 mg/ml was measured at 10°C. 32 successive 0.300 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 149.2,
"experimental_mw_error": null,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": null,
"porod_mw_error": null,
"pddf_i0": 1103.0,
"pddf_i0_error": null,
"guinier_i0": 1095.94,
"guinier_i0_error": 2.49,
"pddf_rg": 3.52,
"pddf_rg_error": null,
"guinier_rg": 3.5,
"guinier_rg_error": 0.06,
"pddf_dmax": 10.6,
"pddf_dmax_error": null,
"porod_volume": 207.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 13,
"guinier_point_last": 42,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDE67_datloglog_img.png",
"symmetry": null,
"last_modified": "2019-12-06T13:07:15.624532+01:00",
"bragg_peak": []
}
查看完整 manifest.json 原文
{
"code": "SASDE67",
"status": "success",
"started_at": "2026-08-11T15:22:50.896327+00:00",
"finished_at": "2026-08-11T15:23:00.412066+00:00",
"source_last_modified": "2019-12-06T13:07:15.624532+01:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDE67/",
"path": "/data/saxsdb/sasbdb/entries/67/sasde67/source/summary.json",
"size": 8718,
"sha256": "6a41f74849dca3487495a0eaf99b886b92b8920af343ffddefe198ae7182f443"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDE67.dat",
"path": "/data/saxsdb/sasbdb/entries/67/sasde67/source/SASDE67.dat",
"size": 27135,
"sha256": "47aaa92193a40af37aed69108fc33e2dd49d335add4a025752f2ebb0cb203f31",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDE67.out",
"path": "/data/saxsdb/sasbdb/entries/67/sasde67/source/SASDE67.out",
"size": 51494,
"sha256": "5efd709f485ddf1242f373e864e8232339aef6ce3ee28355f78409b9e898b437",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDE67.sascif",
"path": "/data/saxsdb/sasbdb/entries/67/sasde67/source/SASDE67.sascif",
"size": 1271474,
"sha256": "3a2830baacb8d49e21ee309e3bbdc38ccdd216b60d9c0acaeee55e6dc09f0e7b",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDE67.zip",
"path": "/data/saxsdb/sasbdb/entries/67/sasde67/source/SASDE67.zip",
"size": 268913,
"sha256": "3a0a4c18f7feea0532cd87acf51fcb0d88d0df0773ef2420069a5f7ad442841d",
"role": "full_entry_zip",
"zip_member_count": 4,
"zip_validation": "central_directory_readable"
}
]
}