SASDEG2

Mitochondrial import inner membrane translocase complex TIM9·10 in complex with a precursor (GDP/GTP carrier (Ggc1))

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Other 最后更新:2019-12-06T13:07:15.624532+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Mitochondrial import inner membrane translocase complex TIM9·10 in complex with a precursor (GDP/GTP carrier (Ggc1))

浓度0.0 – 2.0 缓冲液 / pH50mM Tris, 150mM NaCl, imidiazole / 7.4
实验温度20.0 设备 / 束线ESRF / BM29
波长0.099 nm曝光1.0 s × 50

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Mitochondrial import inner membrane translocase subunit TIM9
查看序列
MDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNAALGQGLGR
proteinSaccharomyces cerevisiaeO74700—–—hexamer分子数 610.202 kDa
Mitochondrial import inner membrane translocase subunit TIM10
查看序列
GSFLGFGGGQPQLSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQSFNAAGKF
proteinSaccharomyces cerevisiaeP87108—–—hexamer分子数 610.23 kDa
Mitochondrial GTP/GDP carrier protein 1
查看序列
QSGLARLLGSASAGIMEIAVFHPVDTISKRLMSNHTKITSGQELNRVIFRDHFSEPLGKRLFTLFPGLGYAASYKVLQRVYKYGGQPFANEFLNKHYKKDFDNLFGEKTGKAMRSAAAGSLIGIGEIVLLPLDVLKIKRQTNPESFKGRGFIKILRDEGLFNLYRGWGWTAARNAPGSFALFGGNAFAKEYILGLKDYSQATWSQNFISSIVGASSSLIVSAPLDVIKTRIQNRNFDNPESGLRIVKNTLKNEGVTAFFKGLTPKLLTTGPKLVFSFALAQSLIPRFDNLLSKLEHHHHHH
proteinSaccharomyces cerevisiaeP389888–300monomer分子数 133.426 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
11014[3]0.16957–4.9448 1/nm含误差列缺失 09sasbdb/entries/g2/sasdeg2/source/SASDEG2.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)16.0—nm
i0Guinier13.90.0095arbitrary
i0P(r)13.97—arbitrary
mwExperimental160.0—kDa
mwPorod160.0—kDa
porod_volumePorod272.0—nm³
rgGuinier4.510.03nm
rgP(r)4.601—nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

拟合 3 · Other

χ²:6.1178CorMap p:0.0单位:1/A
模型名称 / 类型软件对称性模型 MWPDB 声明来源文件
1—atomicGROMACS —156.6—模型 图片
2—atomicGROMACS —156.6—模型 图片
3—atomicGROMACS —156.6—模型 图片
4—atomicGROMACS —156.6—模型 图片
5—atomicGROMACS —156.6—模型 图片
6—atomicGROMACS —156.6—模型 图片
7—atomicGROMACS —156.6—模型 图片
8—atomicGROMACS —156.6—模型 图片
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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称50mM Tris, 150mM NaCl, imidiazole缓冲液浓度—
pH7.4添加剂—
缓冲液说明The imidiazole concentration varies between 200 mM and 300 mM
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2016-02-22储存 / 测量温度20.0 / 20.0
曝光时间1.0帧数50
波长0.099样品-探测器距离2.872
光源X-ray synchrotron探测器Pilatus 1M
机构 / 束线ESRF / BM29 · Grenoble, France
q 范围0.17 – 4.945样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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full_entry_zipsasbdb/entries/g2/sasdeg2/source/SASDEG2.zipdownloaded162546078c5e2fa5e817a0775d569196617926e5dc80eda1b94dc1e8fb9e37b84969b78下载查看原文件源站
pddfsasbdb/entries/g2/sasdeg2/source/SASDEG2.outdownloaded7360101ad628dbe891a88bfcbe5122c839d958b69dc56ba1733b21d2bcddbf0a91627下载查看原文件源站
sascifsasbdb/entries/g2/sasdeg2/source/SASDEG2.sascifdownloaded94274071d94becd78a8e9e3882cfefbc1268102c2ebe6cc0f92cc4a63ce80686abb2fa1下载查看原文件源站
summarysasbdb/entries/g2/sasdeg2/source/summary.jsondownloaded1629051ce8aff6138f34d303fa67931e76c74757b8ce0117f58329e0fad9faa555c88下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(15 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:327 个字段值
字段路径原始值
codeSASDEG2
statusPublished
type_of_curveOther
angular_unit1/nm
project.titleStructural Basis of Membrane Protein Chaperoning through the Mitochondrial Intermembrane Space.
project.publication.titleStructural Basis of Membrane Protein Chaperoning through the Mitochondrial Intermembrane Space.
project.publication.author_listWeinhäupl K, Lindau C, Hessel A, Wang Y, Schütze C, Jores T, Melchionda L, Schönfisch B, Kalbacher H, Bersch B, Rapaport D, Brennich M, Lindorff-Larsen K, Wiedemann N, Schanda P
project.publication.journalCell
project.publication.doi10.1016/j.cell.2018.10.039
project.publication.pmid30445040
project.publication.published_date2018 Nov 15
project.statusreleased
project.submitted_date2018-08-13
project.released_date2018-11-21
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDEG2.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDEG2.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDEG2_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDEG2_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDEG2_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDEG2_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDEG2.sascif
experiment.instrument.detector.typeDectris
experiment.instrument.detector.namePilatus 1M
experiment.instrument.detector.resolution172.0
experiment.instrument.nameESRF
experiment.instrument.cityGrenoble
experiment.instrument.countryFrance
experiment.instrument.beamline_nameBM29
experiment.instrument.beam_geometry
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameMitochondrial import inner membrane translocase subunit TIM9
experiment.sample.molecule[0].short_nameTIM9
experiment.sample.molecule[0].sequenceMDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSE RVGQRFQEQNAALGQGLGR
experiment.sample.molecule[0].organismSaccharomyces cerevisiae
experiment.sample.molecule[0].uniprot_codeO74700
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationhexamer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCS EKFLKHSERVGQRFQEQNAALGQGLGR
experiment.sample.molecule[0].mw10.202
experiment.sample.molecule[0].total_mw61.212
experiment.sample.molecule[0].number_molecules6
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.molecule[1].long_nameMitochondrial import inner membrane translocase subunit TIM10
experiment.sample.molecule[1].short_nameTIM10
experiment.sample.molecule[1].sequenceGSFLGFGGGQPQLSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQSFNAAGKF
experiment.sample.molecule[1].organismSaccharomyces cerevisiae
experiment.sample.molecule[1].uniprot_codeP87108
experiment.sample.molecule[1].uniprot_range_firstnull
experiment.sample.molecule[1].uniprot_range_lastnull
experiment.sample.molecule[1].oligomerizationhexamer
experiment.sample.molecule[1].molecular_typeprotein
experiment.sample.molecule[1].uniprot_sequenceMSFLGFGGGQPQLSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESS CLDRCVAKYFETNVQVGENMQKMGQSFNAAGKF
experiment.sample.molecule[1].mw10.23
experiment.sample.molecule[1].total_mw61.38
experiment.sample.molecule[1].number_molecules6
experiment.sample.molecule[1].complex_stateFalse
experiment.sample.molecule[1].deuterationnull
experiment.sample.molecule[1].molecule_sourcebiological
experiment.sample.molecule[1].molecule_descriptionnull
experiment.sample.molecule[2].long_nameMitochondrial GTP/GDP carrier protein 1
experiment.sample.molecule[2].short_nameGGC1
experiment.sample.molecule[2].sequenceQSGLARLLGSASAGIMEIAVFHPVDTISKRLMSNHTKITSGQELNRVIFRDHFSEPLGKRLFTLFPGLGYAASYKVLQRVYKYGGQPFANEFLNKHYKKDFDNLFGEKTGKAMRSAAAGSLIGIGEIVLLPLDVLKIKRQTNPESFKGRGFIKILRDEGLFNLYRGWGWTAARNAPGSFALFGGNAFAKEYILGLKDYSQATWSQNFISSIVGASSSLIVSAPLDVIKTRIQNRNFDNPESGLRIVKNTLKNEGVTAFFKGLTPKLLTTGPKLVFSFALAQSLIPRFDNLLSKLEHHHHHH
experiment.sample.molecule[2].organismSaccharomyces cerevisiae
experiment.sample.molecule[2].uniprot_codeP38988
experiment.sample.molecule[2].uniprot_range_first8
experiment.sample.molecule[2].uniprot_range_last300
experiment.sample.molecule[2].oligomerizationmonomer
experiment.sample.molecule[2].molecular_typeprotein
experiment.sample.molecule[2].uniprot_sequenceMPHTDKKQSGLARLLGSASAGIMEIAVFHPVDTISKRLMSNHTKITSGQELNRVIFRDHF SEPLGKRLFTLFPGLGYAASYKVLQRVYKYGGQPFANEFLNKHYKKDFDNLFGEKTGKAM RSAAAGSLIGIGEIVLLPLDVLKIKRQTNPESFKGRGFIKILRDEGLFNLYRGWGWTAAR NAPGSFALFGGNAFAKEYILGLKDYSQATWSQNFISSIVGACSSLIVSAPLDVIKTRIQN RNFDNPESGLRIVKNTLKNEGVTAFFKGLTPKLLTTGPKLVFSFALAQSLIPRFDNLLSK
experiment.sample.molecule[2].mw33.426
experiment.sample.molecule[2].total_mw33.426
experiment.sample.molecule[2].number_molecules1
experiment.sample.molecule[2].complex_stateFalse
experiment.sample.molecule[2].deuterationnull
experiment.sample.molecule[2].molecule_sourcebiological
experiment.sample.molecule[2].molecule_descriptionnull
experiment.sample.buffer.name50mM Tris, 150mM NaCl, imidiazole
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentThe imidiazole concentration varies between 200 mM and 300 mM
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.4
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameMitochondrial import inner membrane translocase complex TIM9·10 in complex with a precursor (GDP/GTP carrier (Ggc1))
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameEMBL
experiment.contributor[0].affiliation[0].addressGrenoble, France
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Grenoble Outstation
experiment.contributor[0].affiliation[0].webpagehttps://www.embl.fr/
experiment.contributor[0].contributor_nameMartha
experiment.contributor[0].contributor_surnameBrennich
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2016-02-22
experiment.storage_temperature20.0
experiment.cell_temperature20.0
experiment.exposure_time1.0
experiment.number_of_frames50
experiment.wavelength0.099
experiment.sample_detector_distance2.872
experiment.concentration_min0.0
experiment.concentration_max2.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.17
experiment.s_max4.945
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDEG2_fit1_model1_img.png
fits[0].models[0].softwareDAMMIF
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modeldummy
fits[0].models[0].software_versionr5575
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fits[0].models[0].model_mw138.0
fits[0].models[0].bead_radius3.4
fits[0].models[0].lognull
fits[0].models[0].symmetryC1
fits[0].models[0].commentnull
fits[0].models[0].user119
fits[0].fit_unit1/A
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fits[0].softwareDAMMIF
fits[0].chi_square_value1.358
fits[0].p_value4.5e-05
fits[0].fit_residual_plotSASDEG2_fit1_fitresiduals_img.png
fits[0].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDEG2_fit1.fir
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fits[0].software_versionr5575
fits[0].descriptionnull
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fits[1].models[0].model_mw153.2
fits[1].models[0].bead_radius1.9
fits[1].models[0].lognull
fits[1].models[0].symmetrynull
fits[1].models[0].commentnull
fits[1].models[0].user119
fits[1].fit_unit1/A
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fits[1].softwareCORAL
fits[1].chi_square_value1.89
fits[1].p_value0.0
fits[1].fit_residual_plotSASDEG2_fit2_fitresiduals_img.png
fits[1].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDEG2_fit2.fit
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fits[1].descriptionnull
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fits[2].models[0].bead_radiusnull
fits[2].models[0].lognull
fits[2].models[0].symmetrynull
fits[2].models[0].commentSnapshot from a 7ns coarse-grained simulation. Fit corresponds to weighte ensemble, based on 16 runs
fits[2].models[0].user119
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fits[2].models[1].pdb_link[]
fits[2].models[1].model_titlenull
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查看完整 summary.json 原文
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}
查看完整 manifest.json 原文
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