SASDEH6

BS69 (CC-MYND: Zinc finger MYND domain-containing protein 11, amino acids 480-602)

Data type: SASBDB experimental data Status: Published Curve type: SEC-SAS Last updated: 2019-12-06T13:07:15.624532+01:00

SEC-SAXS was performed using the following parameters: Column type: S200 3.2/300 increase; Flow rate: 0.075 ml/min; Injection volume: 45 µl; Sample injection concentration: 15.0 mg/ml.

▼

1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · BS69 (CC-MYND: Zinc finger MYND domain-containing protein 11, amino acids 480-602)

Concentration— – 15.0 Buffer / pH20mM Tris-HCl, 100mM NaCl, 2% Sucrose and 1mM TCEP / 7.5
Experimental temperature25.0 Facility / beamlineDiamond Light Source / B21
Wavelength0.1 nmExposure3.0 s × 30

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
Zinc finger MYND domain-containing protein 11
View sequence
>BS69-CC-MYNDDRMKSDHKRETERVVREALEKLRSEMEEEKRQAVNKAVANMQGEMDRKCKQVKEKCKEEFVEEIKKLATQHKQLISQTKKKQWCYNCEEEAMYHCCWNTSYCSIKCQQEHWHAEHKRTCRRKR
proteinHomo sapiensQ15326480–602tetramerMolecule count 415.064 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
11413[4]0.0077542–0.334227 1/AHas uncertainty columnMissing 00sasbdb/entries/h6/sasdeh6/source/SASDEH6.dat
▼

2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)16.9—Å
i0Guinier0.096290.00019—
i0P(r)0.09503——
mwExperimental67.1—kDa
porod_volumePorod83.0—ų
rgGuinier5.30.02Å
rgP(r)5.33—Å

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

▼

3. Source Fits and Models Source Fits & Models

▶

4. Source File Index Source Files

▶

5. Experiment Description and Publication Experiment & Publication

▼

6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name20mM Tris-HCl, 100mM NaCl, 2% Sucrose and 1mM TCEPBuffer concentration—
pH7.5Additives—
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2017-09-23Storage / measurement temperature4.0 / 25.0
Exposure time3.0Frames30
Wavelength0.1Sample-to-detector distance4.014
SourceX-ray synchrotronDetectorPilatus 2M
Facility / beamlineDiamond Light Source / B21 · Didcot, UK
q range0.078 – 3.342Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

CategoryFileStatusSizeChecksumDownload and View
curvesasbdb/entries/h6/sasdeh6/source/SASDEH6.datdownloaded70623d9a510394c0f8806ff5cee6d87f93d5a1987cba741b94aaa4cd17d72b2cd28ebDownloadView source fileSource site
full_entry_zipsasbdb/entries/h6/sasdeh6/source/SASDEH6.zipdownloaded87259858153db5739b60365c9ff017d5d5e3a756e126bb9217876bf6867f7fa1b865eDownloadView source fileSource site
pddfsasbdb/entries/h6/sasdeh6/source/SASDEH6.outdownloaded121361fffe0ffb2d9aac614c16e179109d0bfa86148cd9e978efe19f24a85e7fa9d163DownloadView source fileSource site
sascifsasbdb/entries/h6/sasdeh6/source/SASDEH6.sascifdownloaded3201843e1b56374c51c68cacf455244d5d0225f2c00c8e7f5521b29ff8cc805b0ae6f9DownloadView source fileSource site
summarysasbdb/entries/h6/sasdeh6/source/summary.jsondownloaded86101ea06f989fce9674df503b0af43bd703fe2e1a5151b3245d9cde7f0542db2e8fDownloadView source fileSource site
curve:source record
{
  "path": "/data/saxsdb/sasbdb/entries/h6/sasdeh6/source/SASDEH6.dat",
  "role": "curve",
  "sha256": "d9a510394c0f8806ff5cee6d87f93d5a1987cba741b94aaa4cd17d72b2cd28eb",
  "size": 70623,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/intensities_files/SASDEH6.dat"
}
full_entry_zip:source record and ZIP contents (5 items)
{
  "path": "/data/saxsdb/sasbdb/entries/h6/sasdeh6/source/SASDEH6.zip",
  "role": "full_entry_zip",
  "sha256": "858153db5739b60365c9ff017d5d5e3a756e126bb9217876bf6867f7fa1b865e",
  "size": 87259,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/zip_directories/SASDEH6.zip",
  "zip_member_count": 5,
  "zip_members": [
    {
      "crc32": "7ee3270e",
      "name": "SASDEH6/experimental_data/SASDEH6.dat",
      "size": 70623
    },
    {
      "crc32": "5274b7ec",
      "name": "SASDEH6/pddf/SASDEH6.out",
      "size": 121361
    },
    {
      "crc32": "2c5d315c",
      "name": "SASDEH6/SASDEH6_fit1.fir",
      "size": 86249
    },
    {
      "crc32": "7f324fe5",
      "name": "SASDEH6/SASDEH6_fit1_model1.pdb",
      "size": 32346
    },
    {
      "crc32": "82a36fb3",
      "name": "SASDEH6/SASDEH6_fit1_model2.pdb",
      "size": 34482
    }
  ],
  "zip_validation": "central_directory_readable"
}
pddf:source record
{
  "path": "/data/saxsdb/sasbdb/entries/h6/sasdeh6/source/SASDEH6.out",
  "role": "pddf",
  "sha256": "fffe0ffb2d9aac614c16e179109d0bfa86148cd9e978efe19f24a85e7fa9d163",
  "size": 121361,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/p_of_R_files/SASDEH6.out"
}
sascif:source record
{
  "path": "/data/saxsdb/sasbdb/entries/h6/sasdeh6/source/SASDEH6.sascif",
  "role": "sascif",
  "sha256": "3e1b56374c51c68cacf455244d5d0225f2c00c8e7f5521b29ff8cc805b0ae6f9",
  "size": 320184,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDEH6.sascif"
}
summary:source record
{
  "path": "/data/saxsdb/sasbdb/entries/h6/sasdeh6/source/summary.json",
  "sha256": "1ea06f989fce9674df503b0af43bd703fe2e1a5151b3245d9cde7f0542db2e8f",
  "size": 8610,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDEH6/"
}

All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:169 field values
Field pathRaw value
codeSASDEH6
statusPublished
type_of_curveSEC-SAS
angular_unit1/A
project.titleIncreased association between Epstein-Barr virus EBNA2 from type 2 strains and the transcriptional repressor BS69 restricts B cell growth
project.publication.titleIncreased association between Epstein-Barr virus EBNA2 from type 2 strains and the transcriptional repressor BS69 restricts B cell growth
project.publication.author_listPonnusamy R, Khatri R, Correia P, Mancini E, Farrell P, West M
project.publication.journalnull
project.publication.doi10.1101/464131
project.publication.pmidnull
project.publication.published_date2018 Nov 06
project.statusreleased
project.submitted_date2018-10-16
project.released_date2019-06-19
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDEH6.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDEH6.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDEH6_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDEH6_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDEH6_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDEH6_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDEH6.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus 2M
experiment.instrument.detector.resolutionnull
experiment.instrument.nameDiamond Light Source
experiment.instrument.cityDidcot
experiment.instrument.countryUK
experiment.instrument.beamline_nameB21
experiment.instrument.beam_geometry1 x 5 mm
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameZinc finger MYND domain-containing protein 11
experiment.sample.molecule[0].short_nameBS69 CC-MYND
experiment.sample.molecule[0].sequence>BS69-CC-MYND DRMKSDHKRETERVVREALEKLRSEMEEEKRQAVNKAVANMQGEMDRKCKQVKEKCKEEFVEEIKKLATQHKQLISQTKKKQWCYNCEEEAMYHCCWNTSYCSIKCQQEHWHAEHKRTCRRKR
experiment.sample.molecule[0].organismHomo sapiens
experiment.sample.molecule[0].uniprot_codeQ15326
experiment.sample.molecule[0].uniprot_range_first480
experiment.sample.molecule[0].uniprot_range_last602
experiment.sample.molecule[0].oligomerizationtetramer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMARLTKRRQADTKAIQHLWAAIEIIRNQKQIANIDRITKYMSRVHGMHPKETTRQLSLAV KDGLIVETLTVGCKGSKAGIEQEGYWLPGDEIDWETENHDWYCFECHLPGEVLICDLCFR VYHSKCLSDEFRLRDSSSPWQCPVCRSIKKKNTNKQEMGTYLRFIVSRMKERAIDLNKKG KDNKHPMYRRLVHSAVDVPTIQEKVNEGKYRSYEEFKADAQLLLHNTVIFYGADSEQADI ARMLYKDTCHELDELQLCKNCFYLSNARPDNWFCYPCIPNHELVWAKMKGFGFWPAKVMQ KEDNQVDVRFFGHHHQRAWIPSENIQDITVNIHRLHVKRSMGWKKACDELELHQRFLREG RFWKSKNEDRGEEEAESSISSTSNEQLKVTQEPRAKKGRRNQSVEPKKEEPEPETEAVSS SQEIPTMPQPIEKVSVSTQTKKLSASSPRMLHRSTQTTNDGVCQSMCHDKYTKIFNDFKD RMKSDHKRETERVVREALEKLRSEMEEEKRQAVNKAVANMQGEMDRKCKQVKEKCKEEFV EEIKKLATQHKQLISQTKKKQWCYNCEEEAMYHCCWNTSYCSIKCQQEHWHAEHKRTCRR KR
experiment.sample.molecule[0].mw15.064
experiment.sample.molecule[0].total_mw60.256
experiment.sample.molecule[0].number_molecules4
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name20mM Tris-HCl, 100mM NaCl, 2% Sucrose and 1mM TCEP
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameBS69 (CC-MYND: Zinc finger MYND domain-containing protein 11, amino acids 480-602)
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressBrighton, UK
experiment.contributor[0].affiliation[0].full_nameUniversity of Sussex
experiment.contributor[0].affiliation[0].webpagehttp://www.sussex.ac.uk/
experiment.contributor[0].contributor_nameRajesh
experiment.contributor[0].contributor_surnamePonnusamy
experiment.contributor[0].orcid
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2017-09-23
experiment.storage_temperature4.0
experiment.cell_temperature25.0
experiment.exposure_time3.0
experiment.number_of_frames30
experiment.wavelength0.1
experiment.sample_detector_distance4.014
experiment.concentration_minnull
experiment.concentration_max15.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.078
experiment.s_max3.342
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDEH6_fit1_model1_img.png
fits[0].models[0].softwareDAMMIN
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modeldummy
fits[0].models[0].software_versionnull
fits[0].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDEH6_fit1_model1.pdb
fits[0].models[0].model_mw31.636
fits[0].models[0].bead_radius3.0
fits[0].models[0].lognull
fits[0].models[0].symmetrynull
fits[0].models[0].commentnull
fits[0].models[0].user357
fits[0].models[1].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDEH6_fit1_model2_img.png
fits[0].models[1].softwareDAMMIF
fits[0].models[1].pdb_link[]
fits[0].models[1].model_titlenull
fits[0].models[1].type_of_modeldummy
fits[0].models[1].software_versionnull
fits[0].models[1].model_datahttps://www.sasbdb.org/media/pdb_file/SASDEH6_fit1_model2.pdb
fits[0].models[1].model_mw34.311
fits[0].models[1].bead_radius3.0
fits[0].models[1].lognull
fits[0].models[1].symmetrynull
fits[0].models[1].commentnull
fits[0].models[1].user357
fits[0].fit_unit1/A
fits[0].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/169-bs69_fit_img.png
fits[0].softwareDAMMIN
fits[0].chi_square_value1.326
fits[0].p_value0.0
fits[0].fit_residual_plot169-bs69_fitresiduals_img.png
fits[0].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDEH6_fit1.fir
fits[0].fit_loghttps://www.sasbdb.org/media/fitting_files/log_files/169-bs69.log
fits[0].software_versionnull
fits[0].description
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionSEC-SAXS was performed using the following parameters: Column type: S200 3.2/300 increase; Flow rate: 0.075 ml/min; Injection volume: 45 µl; Sample injection concentration: 15.0 mg/ml.
experiment_descriptionSynchrotron SAXS data from solutions of BS69 (CC-MYND: Zinc finger MYND domain-containing protein 11, amino acids 480-602) in 20mM Tris-HCl, 100mM NaCl, 2% Sucrose and 1mM TCEP, pH 7.5 were collected on the B21 beam line at the Diamond Light Source storage ring (Oxfordshire, UK) using a Pilatus 2M detector at a sample-detector distance of 4.0 m and at a wavelength of λ = 0.1 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). The sample was measured using size exclusion chromatography SAXS (SEC-SAXS) at 25°C. 30 successive 3 second frames were collected through the SEC sample elution peak. The data were normalized to the intensity of the transmitted beam and radially averaged and the scattering of an appropriate solvent-blank was subtracted.
tags[]
intensity_unitnull
experimental_mw67.1
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mwnull
porod_mw_errornull
pddf_i00.09503
pddf_i0_errornull
guinier_i00.09629
guinier_i0_error0.00019
pddf_rg5.33
pddf_rg_errornull
guinier_rg5.3
guinier_rg_error0.02
pddf_dmax16.9
pddf_dmax_errornull
porod_volume83.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first8
guinier_point_last65
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDEH6_datloglog_img.png
symmetrynull
last_modified2019-12-06T13:07:15.624532+01:00
bragg_peak[]
manifest.json:36 field values
Field pathRaw value
codeSASDEH6
statussuccess
started_at2026-08-11T15:10:20.133017+00:00
finished_at2026-08-11T15:10:30.479746+00:00
source_last_modified2019-12-06T13:07:15.624532+01:00
files[0].statusdownloaded
files[0].urlhttps://www.sasbdb.org/rest-api/entry/summary/SASDEH6/
files[0].path/data/saxsdb/sasbdb/entries/h6/sasdeh6/source/summary.json
files[0].size8610
files[0].sha2561ea06f989fce9674df503b0af43bd703fe2e1a5151b3245d9cde7f0542db2e8f
files[1].statusdownloaded
files[1].urlhttps://www.sasbdb.org/media/intensities_files/SASDEH6.dat
files[1].path/data/saxsdb/sasbdb/entries/h6/sasdeh6/source/SASDEH6.dat
files[1].size70623
files[1].sha256d9a510394c0f8806ff5cee6d87f93d5a1987cba741b94aaa4cd17d72b2cd28eb
files[1].rolecurve
files[2].statusdownloaded
files[2].urlhttps://www.sasbdb.org/media/p_of_R_files/SASDEH6.out
files[2].path/data/saxsdb/sasbdb/entries/h6/sasdeh6/source/SASDEH6.out
files[2].size121361
files[2].sha256fffe0ffb2d9aac614c16e179109d0bfa86148cd9e978efe19f24a85e7fa9d163
files[2].rolepddf
files[3].statusdownloaded
files[3].urlhttps://www.sasbdb.org/media/sascif/sascif_files/SASDEH6.sascif
files[3].path/data/saxsdb/sasbdb/entries/h6/sasdeh6/source/SASDEH6.sascif
files[3].size320184
files[3].sha2563e1b56374c51c68cacf455244d5d0225f2c00c8e7f5521b29ff8cc805b0ae6f9
files[3].rolesascif
files[4].statusdownloaded
files[4].urlhttps://www.sasbdb.org/media/zip_directories/SASDEH6.zip
files[4].path/data/saxsdb/sasbdb/entries/h6/sasdeh6/source/SASDEH6.zip
files[4].size87259
files[4].sha256858153db5739b60365c9ff017d5d5e3a756e126bb9217876bf6867f7fa1b865e
files[4].rolefull_entry_zip
files[4].zip_member_count5
files[4].zip_validationcentral_directory_readable
View the complete summary.json source
{
  "code": "SASDEH6",
  "status": "Published",
  "type_of_curve": "SEC-SAS",
  "angular_unit": "1/A",
  "project": {
    "title": "Increased association between Epstein-Barr virus EBNA2 from type 2 strains and the transcriptional repressor BS69 restricts B cell growth",
    "publication": {
      "title": "Increased association between Epstein-Barr virus EBNA2 from type 2 strains and the transcriptional repressor BS69 restricts B cell growth",
      "author_list": "Ponnusamy R, Khatri R, Correia P, Mancini E, Farrell P, West M",
      "journal": null,
      "doi": "10.1101/464131",
      "pmid": null,
      "published_date": "2018 Nov 06"
    },
    "status": "released",
    "submitted_date": "2018-10-16",
    "released_date": "2019-06-19"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDEH6.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDEH6.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDEH6_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDEH6_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDEH6_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDEH6_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDEH6.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Pilatus 2M",
        "resolution": null
      },
      "name": "Diamond Light Source",
      "city": "Didcot",
      "country": "UK",
      "beamline_name": "B21",
      "beam_geometry": "1 x 5 mm",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Zinc finger MYND domain-containing protein 11",
          "short_name": "BS69 CC-MYND",
          "sequence": ">BS69-CC-MYND\r\nDRMKSDHKRETERVVREALEKLRSEMEEEKRQAVNKAVANMQGEMDRKCKQVKEKCKEEFVEEIKKLATQHKQLISQTKKKQWCYNCEEEAMYHCCWNTSYCSIKCQQEHWHAEHKRTCRRKR",
          "organism": "Homo sapiens",
          "uniprot_code": "Q15326",
          "uniprot_range_first": 480,
          "uniprot_range_last": 602,
          "oligomerization": "tetramer",
          "molecular_type": "protein",
          "uniprot_sequence": "MARLTKRRQADTKAIQHLWAAIEIIRNQKQIANIDRITKYMSRVHGMHPKETTRQLSLAV\nKDGLIVETLTVGCKGSKAGIEQEGYWLPGDEIDWETENHDWYCFECHLPGEVLICDLCFR\nVYHSKCLSDEFRLRDSSSPWQCPVCRSIKKKNTNKQEMGTYLRFIVSRMKERAIDLNKKG\nKDNKHPMYRRLVHSAVDVPTIQEKVNEGKYRSYEEFKADAQLLLHNTVIFYGADSEQADI\nARMLYKDTCHELDELQLCKNCFYLSNARPDNWFCYPCIPNHELVWAKMKGFGFWPAKVMQ\nKEDNQVDVRFFGHHHQRAWIPSENIQDITVNIHRLHVKRSMGWKKACDELELHQRFLREG\nRFWKSKNEDRGEEEAESSISSTSNEQLKVTQEPRAKKGRRNQSVEPKKEEPEPETEAVSS\nSQEIPTMPQPIEKVSVSTQTKKLSASSPRMLHRSTQTTNDGVCQSMCHDKYTKIFNDFKD\nRMKSDHKRETERVVREALEKLRSEMEEEKRQAVNKAVANMQGEMDRKCKQVKEKCKEEFV\nEEIKKLATQHKQLISQTKKKQWCYNCEEEAMYHCCWNTSYCSIKCQQEHWHAEHKRTCRR\nKR",
          "mw": 15.064,
          "total_mw": 60.256,
          "number_molecules": 4,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        }
      ],
      "buffer": {
        "name": "20mM Tris-HCl, 100mM NaCl, 2% Sucrose and 1mM TCEP",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.5,
        "deuteration": null
      },
      "purity_method": null,
      "name": "BS69 (CC-MYND: Zinc finger MYND domain-containing protein 11, amino acids 480-602)",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": "Brighton, UK",
            "full_name": "University of Sussex",
            "webpage": "http://www.sussex.ac.uk/"
          }
        ],
        "contributor_name": "Rajesh",
        "contributor_surname": "Ponnusamy",
        "orcid": ""
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2017-09-23",
    "storage_temperature": 4.0,
    "cell_temperature": 25.0,
    "exposure_time": 3.0,
    "number_of_frames": 30,
    "wavelength": 0.1,
    "sample_detector_distance": 4.014,
    "concentration_min": null,
    "concentration_max": 15.0,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.078,
    "s_max": 3.342,
    "total_exposure_time": null,
    "seccolumn": null
  },
  "fits": [
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDEH6_fit1_model1_img.png",
          "software": "DAMMIN",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "dummy",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDEH6_fit1_model1.pdb",
          "model_mw": 31.636,
          "bead_radius": 3.0,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 357
        },
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDEH6_fit1_model2_img.png",
          "software": "DAMMIF",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "dummy",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDEH6_fit1_model2.pdb",
          "model_mw": 34.311,
          "bead_radius": 3.0,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 357
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/169-bs69_fit_img.png",
      "software": "DAMMIN",
      "chi_square_value": 1.326,
      "p_value": 0.0,
      "fit_residual_plot": "169-bs69_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDEH6_fit1.fir",
      "fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/169-bs69.log",
      "software_version": null,
      "description": ""
    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": "5.0",
  "i0_calibration_standard": null,
  "description": "SEC-SAXS was performed using the following parameters: Column type: S200 3.2/300 increase; Flow rate: 0.075 ml/min; Injection volume: 45 µl; Sample injection concentration: 15.0 mg/ml.",
  "experiment_description": "Synchrotron SAXS data from solutions of BS69 (CC-MYND: Zinc finger MYND domain-containing protein 11, amino acids 480-602) in 20mM Tris-HCl, 100mM NaCl, 2% Sucrose and 1mM TCEP, pH 7.5 were collected on the B21 beam line at the Diamond Light Source storage ring (Oxfordshire, UK) using a Pilatus 2M detector at a sample-detector distance of 4.0 m and at a wavelength of λ = 0.1 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). The sample was measured using size exclusion chromatography SAXS (SEC-SAXS) at 25°C. 30 successive 3 second frames were collected through the SEC sample elution peak. The data were normalized to the intensity of the transmitted beam and radially averaged and the scattering of an appropriate solvent-blank was subtracted.",
  "tags": [],
  "intensity_unit": null,
  "experimental_mw": 67.1,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": null,
  "porod_mw_error": null,
  "pddf_i0": 0.09503,
  "pddf_i0_error": null,
  "guinier_i0": 0.09629,
  "guinier_i0_error": 0.00019,
  "pddf_rg": 5.33,
  "pddf_rg_error": null,
  "guinier_rg": 5.3,
  "guinier_rg_error": 0.02,
  "pddf_dmax": 16.9,
  "pddf_dmax_error": null,
  "porod_volume": 83.0,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 8,
  "guinier_point_last": 65,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDEH6_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2019-12-06T13:07:15.624532+01:00",
  "bragg_peak": []
}
View the complete manifest.json source
{
  "code": "SASDEH6",
  "status": "success",
  "started_at": "2026-08-11T15:10:20.133017+00:00",
  "finished_at": "2026-08-11T15:10:30.479746+00:00",
  "source_last_modified": "2019-12-06T13:07:15.624532+01:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDEH6/",
      "path": "/data/saxsdb/sasbdb/entries/h6/sasdeh6/source/summary.json",
      "size": 8610,
      "sha256": "1ea06f989fce9674df503b0af43bd703fe2e1a5151b3245d9cde7f0542db2e8f"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDEH6.dat",
      "path": "/data/saxsdb/sasbdb/entries/h6/sasdeh6/source/SASDEH6.dat",
      "size": 70623,
      "sha256": "d9a510394c0f8806ff5cee6d87f93d5a1987cba741b94aaa4cd17d72b2cd28eb",
      "role": "curve"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/p_of_R_files/SASDEH6.out",
      "path": "/data/saxsdb/sasbdb/entries/h6/sasdeh6/source/SASDEH6.out",
      "size": 121361,
      "sha256": "fffe0ffb2d9aac614c16e179109d0bfa86148cd9e978efe19f24a85e7fa9d163",
      "role": "pddf"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDEH6.sascif",
      "path": "/data/saxsdb/sasbdb/entries/h6/sasdeh6/source/SASDEH6.sascif",
      "size": 320184,
      "sha256": "3e1b56374c51c68cacf455244d5d0225f2c00c8e7f5521b29ff8cc805b0ae6f9",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDEH6.zip",
      "path": "/data/saxsdb/sasbdb/entries/h6/sasdeh6/source/SASDEH6.zip",
      "size": 87259,
      "sha256": "858153db5739b60365c9ff017d5d5e3a756e126bb9217876bf6867f7fa1b865e",
      "role": "full_entry_zip",
      "zip_member_count": 5,
      "zip_validation": "central_directory_readable"
    }
  ]
}