查看完整 summary.json 原文
{
"code": "SASDEQ7",
"status": "Published",
"type_of_curve": "Merged",
"angular_unit": "1/nm",
"project": {
"title": "Non-syndromic Mitral Valve Dysplasia Mutation Changes the Force Resilience and Interaction of Human Filamin A.",
"publication": {
"title": "Non-syndromic Mitral Valve Dysplasia Mutation Changes the Force Resilience and Interaction of Human Filamin A.",
"author_list": "Haataja TJK, Bernardi RC, Lecointe S, Capoulade R, Merot J, Pentikäinen U",
"journal": "Structure",
"doi": "10.1016/j.str.2018.09.007",
"pmid": "30344108",
"published_date": "2018 Oct 9"
},
"status": "released",
"submitted_date": "2018-11-12",
"released_date": "2018-11-12"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDEQ7.out",
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"name": "Pilatus 1M",
"resolution": 172.0
},
"name": "ESRF",
"city": "Grenoble",
"country": "France",
"beamline_name": "BM29",
"beam_geometry": "",
"type_of_source": "X-ray synchrotron",
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},
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{
"long_name": "Filamin A Ig-like domains 3-5",
"short_name": "FLNa3-5",
"sequence": ">FLNa3-5\r\nCNPSACRAVGRGLQPKGVRVKETADFKVYTKGAGSGELKVTVKGPKGEERVKQKDLGDGVYGFEYYPMVPGTYIVTITWGGQNIGRSPFEVKVGTECGNQKVRAWGPGLEGGVVGKSADFVVEAIGDDVGTLGFSVEGPSQAKIECDDKGDGSCDVRYWPQEAGEYAVHVLCNSEDIRLSPFMADIRDAPQDFHPDRVKARGPGLEKTGVAVNKPAEFTVDAKHGGKAPLRVQVQDNEGCPVEALVKDNGNGTYSCSYVPRKPVKHTAMVSWGGVSIPNSPFRVNVGAG",
"organism": "Homo sapiens",
"uniprot_code": "P21333",
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"oligomerization": "monomer",
"molecular_type": "protein",
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"mw": 30.76,
"total_mw": 30.76,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "20 mM Tris, 100 mM NaCl, 1 mM DTT",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 8.0,
"deuteration": null
},
"purity_method": null,
"name": "Filamin A Ig-like domains 3-5 (FLNa3-5)",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "Jyväskylän, Finland",
"full_name": "University of Jyväskylä",
"webpage": "https://www.jyu.fi"
}
],
"contributor_name": "Tatu",
"contributor_surname": "Haataja",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2017-02-10",
"storage_temperature": null,
"cell_temperature": 20.0,
"exposure_time": 1.0,
"number_of_frames": 10,
"wavelength": 0.1,
"sample_detector_distance": 2.9,
"concentration_min": 1.0,
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"s_min": 0.06,
"s_max": 4.937,
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},
"fits": [
{
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{
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"software": "PDB (Protein Data Bank)",
"pdb_link": [
{
"pdb_code": "4m9p",
"ext_code": "4M9P",
"ext_type": "pdb",
"difference_with_model": "identical"
}
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"model_mw": 30.74,
"bead_radius": null,
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"comment": null,
"user": 251
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/FLNa35_crysol_fit_img.png",
"software": "CRYSOL",
"chi_square_value": 1.001,
"p_value": 0.0,
"fit_residual_plot": "fit4columns1920_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDEQ7_fit1.fit",
"fit_log": null,
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"description": ""
}
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"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
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"i0_calibration_standard": null,
"description": "SAXS data describing the Filamin A Ig-like domains 3-5 in solution. The experiment was done to enable comparison with the corresponding P637Q mutated fragment (SASDEP7).",
"experiment_description": "Synchrotron SAXS data from solutions of Filamin A Ig-like domains 3-5 in 20 mM Tris, 100 mM NaCl, 1 mM DTT, pH 8 were collected on the BM29 beam line at the ESRF (Grenoble, France) using a Pilatus 1M detector at a sample-detector distance of 2.9 m and at a wavelength of λ = 0.1 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 1 and 4 mg/ml were measured at 20°C. 10 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve.",
"tags": [],
"intensity_unit": "arbitrary",
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"guinier_rg": 2.19,
"guinier_rg_error": 0.1,
"pddf_dmax": 7.34,
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"porod_volume": 39.0,
"porod_volume_error": null,
"estimated_volume": null,
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"guinier_point_first": 8,
"guinier_point_last": 114,
"pddf_point_first": null,
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"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDEQ7_datloglog_img.png",
"symmetry": null,
"last_modified": "2019-12-06T13:07:15.624532+01:00",
"bragg_peak": []
}查看完整 manifest.json 原文
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