查看完整 summary.json 原文
{
"code": "SASDER4",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "Engineered variants provide new insight into the structural properties important for activity of the highly dynamic, trimeric protein disulfide isomerase ScsC from Proteus mirabilis.",
"publication": {
"title": "Engineered variants provide new insight into the structural properties important for activity of the highly dynamic, trimeric protein disulfide isomerase ScsC from Proteus mirabilis.",
"author_list": "Furlong EJ, Kurth F, Premkumar L, Whitten AE, Martin JL",
"journal": "Acta Crystallogr D Struct Biol",
"doi": "10.1107/S2059798319000081",
"pmid": "30950400",
"published_date": "2019 Mar 1"
},
"status": "released",
"submitted_date": "2018-09-18",
"released_date": "2019-03-29"
},
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"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDER4_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDER4_pofr_img.png",
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"name": "Pilatus 1M",
"resolution": 172.0
},
"name": "Australian Synchrotron",
"city": "Melbourne",
"country": "Australia",
"beamline_name": "SAXS/WAXS",
"beam_geometry": "Point",
"type_of_source": "X-ray synchrotron",
"point_source": true,
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},
"sample": {
"molecule": [
{
"long_name": "Suppressor of Copper Sensitivity C protein",
"short_name": "PmScsC",
"sequence": "SNAALNAAQEKEVRALVRDTLVSNPEILEEAIMALQTKKADEQQAQFRQALASEHDALYNDAASPRIGAKDAKLVLVSFTDYNCPYCKRFDPLLEKITEQYPDVAVIIKPLPFKGESSAKASQAVLSVWKEDPKAFLALHQRLMQKKTMLDNASIEDAMKSTNTSKIKLTDDSLKTLQNNLELSRKLGIQGTPATVIGDTILPGAVDYDQLEIIVKEQLAKVKK",
"organism": "Proteus mirabilis",
"uniprot_code": "A0A1Z1SYD5",
"uniprot_range_first": 22,
"uniprot_range_last": 243,
"oligomerization": "trimer",
"molecular_type": "protein",
"uniprot_sequence": "MKKTLSVLVISSLLFGANVQAAALNAAQEKEVRALVRDTLVSNPEILEEAIMALQTKKAD\nEQQAQFRQALASEHDALYNDAASPRIGAKDAKLVLVSFTDYNCPYCKRFDPLLEKITEQY\nPDVAVIIKPLPFKGESSAKASQAVLSVWKEDPKAFLALHQRLMQKKTMLDNASIEDAMKS\nTNTSKIKLTDDSLKTLQNNLELSRKLGIQGTPATVIGDTILPGAVDYDQLEIIVKEQLAK\nVKK",
"mw": 24.765,
"total_mw": 74.295,
"number_molecules": 3,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
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"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.4,
"deuteration": null
},
"purity_method": null,
"name": "Wild-type suppressor of copper sensitivity C protein, PmScsC, with concentration series data",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "ANSTO",
"address": "Kirrawee DC, NSW 2232, Australia",
"full_name": "Australian Nuclear Science and Technology Organisation",
"webpage": ""
}
],
"contributor_name": "Andrew",
"contributor_surname": "Whitten",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2018-04-05",
"storage_temperature": 4.0,
"cell_temperature": 10.0,
"exposure_time": 1.0,
"number_of_frames": 38,
"wavelength": 0.1033,
"sample_detector_distance": 3.33,
"concentration_min": null,
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"s_min": 0.16,
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},
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{
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{
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"software": "Other",
"pdb_link": [
{
"pdb_code": "6mhh",
"ext_code": "6MHH",
"ext_type": "pdb",
"difference_with_model": "identical"
}
],
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"model_data": "https://www.sasbdb.org/media/pdb_file/SASDER4_fit1_model1.pdb",
"model_mw": 73.67,
"bead_radius": null,
"log": null,
"symmetry": "P3",
"comment": "Model taken from SASDB94",
"user": 111
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/PmScsC_10p0_fit_img.png",
"software": "Other",
"chi_square_value": 818.0071,
"p_value": 0.0,
"fit_residual_plot": "PmScsC_10p0_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDER4_fit1.fit",
"fit_log": null,
"software_version": "1",
"description": "Monomer concentration = 0.08 uM\r\nTrimer concentration = 95.05 uM"
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
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"description": null,
"experiment_description": "X-ray synchrotron radiation scattering data from solutions of Suppressor of Copper Sensitivity C protein (ScsC) protein from Proteus mirabilis in 10 mM HEPES 150mM NaCl, pH 7.4 were collected on the SAXS/WAXS beam line of the Australian Synchrotron (Melbourne, Australia) using a 2D Photon counting Pilatus 1M-W pixel detector (s = 4π sin θ/λ, where 2θ is the scattering angle). Thirty eight successive 1 second frames were collected across solute concentrations of 0.1-10.0 mg/ml at a sample temperature of 10°C. The data were normalized to the intensity of the transmitted beam and radially averaged and the scattering of the solvent-blank was subtracted. The SAXS data displayed this entry was derived from a 10.0 mg/ml sample and show that essentially only trimer is present in solution. A linear combination of monomer and trimer are fit to the scattering curve, and the final concentration of each species in solution was determined to be: 0.08 µM (monomer); 95.05 µM (trimer). Together, with data collected at other concentration (available to download as a zip archive), it was estimated that K1 (3monomer <-> trimer) was 6.3 nM^2.",
"tags": [],
"intensity_unit": "1/cm",
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"guinier_i0_mw": null,
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"guinier_i0_error": 2e-05,
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"guinier_rg_error": 0.01,
"pddf_dmax": 11.1,
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"porod_volume": 100.6,
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"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 1,
"guinier_point_last": 11,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDER4_datloglog_img.png",
"symmetry": null,
"last_modified": "2021-08-18T17:33:59.051265+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
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"status": "success",
"started_at": "2026-08-11T16:30:53.917826+00:00",
"finished_at": "2026-08-11T16:31:03.049839+00:00",
"source_last_modified": "2021-08-18T17:33:59.051265+02:00",
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