查看完整 summary.json 原文
{
"code": "SASDET9",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "MglA functions as a three-state GTPase to control movement reversals of Myxococcus xanthus.",
"publication": {
"title": "MglA functions as a three-state GTPase to control movement reversals of Myxococcus xanthus.",
"author_list": "Galicia C, Lhospice S, Varela PF, Trapani S, Zhang W, Navaza J, Herrou J, Mignot T, Cherfils J",
"journal": "Nat Commun",
"doi": "10.1038/s41467-019-13274-3",
"pmid": "31757955",
"published_date": "2019 Nov 22"
},
"status": "released",
"submitted_date": "2019-01-17",
"released_date": "2019-12-11"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDET9.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDET9.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDET9_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDET9_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDET9_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDET9_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDET9.sascif",
"experiment": {
"instrument": {
"detector": {
"type": "CCD",
"name": "AVIEX PCCD170170",
"resolution": null
},
"name": "SOLEIL",
"city": "Saint-Aubin",
"country": "France",
"beamline_name": "SWING",
"beam_geometry": "",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Gliding motility protein MglB",
"short_name": "MglB",
"sequence": "GMGTQLVMYEEEFTKINAVCDRLTKDANAKVVFLVDKNGQLISSAGQTQNIDTTSLASLTAGNVAAMGGLAKLIGENEFPNQFHEGAKDSLYMTIVGSRVVLVVIFDNRTSLGLVRLRIKKASDELTKIFESLVKKTDSPGAGSPFAEISDDDIDNLFSE",
"organism": "Myxococcus xanthus",
"uniprot_code": "Q1DB03",
"uniprot_range_first": 1,
"uniprot_range_last": 159,
"oligomerization": "dimer",
"molecular_type": "protein",
"uniprot_sequence": "MGTQLVMYEEEFTKINAVCDRLTKDANAKVVFLVDKNGQLISSAGQTQNIDTTSLASLTA\nGNVAAMGGLAKLIGENEFPNQFHEGAKDSLYMTIVGSRVVLVVIFDNRTSLGLVRLRIKK\nASDELTKIFESLVKKTDSPGAGSPFAEISDDDIDNLFSE",
"mw": 17.249,
"total_mw": 34.498,
"number_molecules": 2,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "150 mM NaCl, 1 mM DTT, 20 mM Tris-HCl",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 8.0,
"deuteration": null
},
"purity_method": null,
"name": "Gliding motility protein MglB: A GAP of Myxococcus xanthus MglA",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "Cachan, France",
"full_name": "CNRS UMR8113, ENS Paris-Saclay",
"webpage": "http://lbpa.ens-paris-saclay.fr/"
}
],
"contributor_name": "Wenhua",
"contributor_surname": "Zhang",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2017-10-09",
"storage_temperature": 15.0,
"cell_temperature": 15.0,
"exposure_time": null,
"number_of_frames": null,
"wavelength": 0.103,
"sample_detector_distance": 1.8,
"concentration_min": null,
"concentration_max": 15.0,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.061,
"s_max": 5.689,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDET9_fit1_model1_img.png",
"software": "GASBOR",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDET9_fit1_model1.pdb",
"model_mw": null,
"bead_radius": 1.9,
"log": "https://www.sasbdb.org/media/log_files/WZ-GS-F1_1.log",
"symmetry": "P2",
"comment": null,
"user": 84
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDET9_fit1_fixed_fit_img.png",
"software": "GASBOR",
"chi_square_value": 0.68,
"p_value": 0.0,
"fit_residual_plot": "SASDET9_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDET9_fit1.fir",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/WZ-GS-F1_1.log",
"software_version": null,
"description": ""
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": "X-ray exposure time = UNKNOWN.",
"experiment_description": "Synchrotron SAXS data from solutions of the gliding motility protein MglB in 150 mM NaCl, 1 mM DTT, 20 mM Tris-HCl, pH 8 were collected on the SWING beam line at SOLEIL (Saint-Aubin, France) using a CCD AVIEX PCCD170170 detector at a sample-detector distance of 1.8 m and at a wavelength of λ = 0.103 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 15.00 mg/ml was measured at 15°C. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
"tags": [],
"intensity_unit": "1/cm",
"experimental_mw": 36.5,
"experimental_mw_error": null,
"guinier_i0_mw": 37.1,
"guinier_i0_mw_error": null,
"porod_mw": 37.6,
"porod_mw_error": null,
"pddf_i0": 0.04817,
"pddf_i0_error": null,
"guinier_i0": 0.04769,
"guinier_i0_error": 7e-05,
"pddf_rg": 2.85,
"pddf_rg_error": null,
"guinier_rg": 2.761,
"guinier_rg_error": 0.033,
"pddf_dmax": 10.3,
"pddf_dmax_error": null,
"porod_volume": 56.4,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 33,
"guinier_point_last": 82,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDET9_datloglog_img.png",
"symmetry": null,
"last_modified": "2019-12-11T14:14:30.684937+01:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
"code": "SASDET9",
"status": "success",
"started_at": "2026-08-11T16:21:33.598410+00:00",
"finished_at": "2026-08-11T16:21:43.962423+00:00",
"source_last_modified": "2019-12-11T14:14:30.684937+01:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDET9/",
"path": "/data/saxsdb/sasbdb/entries/t9/sasdet9/source/summary.json",
"size": 7298,
"sha256": "3c00209af436f83295376c9bf2057335ba0aecba75e52205c746f244ff16f090"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDET9.dat",
"path": "/data/saxsdb/sasbdb/entries/t9/sasdet9/source/SASDET9.dat",
"size": 46073,
"sha256": "48c5334d0f6ed16b58ae7985a2c47578bd501c2c4b003a8b6e0862d1b77e3deb",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDET9.out",
"path": "/data/saxsdb/sasbdb/entries/t9/sasdet9/source/SASDET9.out",
"size": 42428,
"sha256": "d11dc17fb55a84ead8d2152a91f4f721368b414c9e85f8e8a2ccce26a421b21a",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDET9.sascif",
"path": "/data/saxsdb/sasbdb/entries/t9/sasdet9/source/SASDET9.sascif",
"size": 172184,
"sha256": "bcd0588f31b23c4faed3dff771b85a1d55d6268caa51487a4c53179f91a7acd0",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDET9.zip",
"path": "/data/saxsdb/sasbdb/entries/t9/sasdet9/source/SASDET9.zip",
"size": 48926,
"sha256": "54968e0c46de7a71fa8d77eb275c372b03335c76aff9cf75c5cf6fb0b480f3f9",
"role": "full_entry_zip",
"zip_member_count": 4,
"zip_validation": "central_directory_readable"
}
]
}
