Legionella pneumophila Phosphocholinase AnkX

{
  "code": "SASDEU9",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "Legionella pneumophila effector AnkX",
    "publication": null,
    "status": "released",
    "submitted_date": "2019-01-17",
    "released_date": "2024-01-17"
  },
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  "experiment": {
    "instrument": {
      "detector": {
        "type": "Dectris",
        "name": "Pilatus 1M",
        "resolution": 172.0
      },
      "name": "ESRF",
      "city": "Grenoble",
      "country": "France",
      "beamline_name": "BM29",
      "beam_geometry": "",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
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      "line_collimation_integrationwidth": null,
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      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Phosphocholinase AnkX",
          "short_name": "AnkX",
          "sequence": "GVKIMPNLPGLYFLQAYPSEEIWRLFVDGRFWSKENGWRGYESREPGCL\r\nNAALESLCSIALQVEKSGEEFELSVDLIKRIHKKCGKKVEELQEKNPGE\r\nLRTDEPVSFGIPAGRASIKGIEEFLSLVFLTEGGAEFGPGKAGPFGPRF\r\nDKNYFKNLNPEQIPDLAKQIYFDMCKYGHSNTNHFYLAVMKNVDVYLEK\r\nITQSYNKEIKTAETLDEKLKIIVKHIRMYEVLHPFRDANGRTFVNNLLN\r\nIPLMQQGLPPATFYEPNVFDLYSAEELVVVVKEAIFNTVEIIEQSKRKT\r\nPITLYGYHSSLEEQTKFRDMLDSPSYEKIKHMDFSDLNPEKLHLKTQKC\r\nLSSLNEQYPLHRGAIYLSDPGEIKLLLSNRNESQINQQIEQGAPPIYVG\r\nKTPAHLAVISGNMAMLDELIAKKADLSLQDYDGKTALHYAAECGNMQIM\r\nGKILKVVLSQEDAIKVLNIKDNHGKTAFHYAAEFGTPELISALTTTEVI\r\nQINEPDNSGSSAITLAYKNHKLKIFDELLNSGADISDELLDAIWARKDK\r\nETLGKIIAKNEKILLNKEAFRIAISLGSVSLVKKFLRAGVDIDIPLTKD\r\nKATPLMLSINSGNPKLVSYLLKKGANTRLTDTSGNSVLHYVFYSKAENR\r\nEALANIITEKDKKLINQPNANGNPPLYNAVVVNDLKMATILLEMGARVD\r\nFEDRLGNNILHSAMRRCDLPIILDIVKKDSTLLHKRNSERRNPFHQALH\r\nEMHTFPSSKETEEIHFMNLSDLLLKEGVDLNKKDIKGKTILDIALSKQY\r\nFHLCVKLMKAGAHTNISSPSKFLKNSDANSILERPFKFKNDLKKELDNN\r\nPLIAMAQINDLYVQIKNNRIRTPTGYAPKEGVSFFKGKSNDAKAHDEVL\r\nSVLKELYDSKLTEMLGNLPGEGLEEIKRSQKFFDGELKLLIKNQDISRK\r\nVDKKSIQEAVGTSLKLKW",
          "organism": "Legionella pneumophila",
          "uniprot_code": "Q5ZXN6",
          "uniprot_range_first": null,
          "uniprot_range_last": null,
          "oligomerization": "monomer",
          "molecular_type": "protein",
          "uniprot_sequence": "MVKIMPNLPGLYFLQAYPSEEIWRLFVDGRFWSKENGWRGYESREPGCLNAALESLCSIA\nLQVEKSGEEFELSVDLIKRIHKKCGKKVEELQEKNPGELRTDEPVSFGIPAGRASIKGIE\nEFLSLVFLTEGGAEFGPGKAGPFGPRFDKNYFKNLNPEQIPDLAKQIYFDMCKYGHSNTN\nHFYLAVMKNVDVYLEKITQSYNKEIKTAETLDEKLKIIVKHIRMYEVLHPFRDANGRTFV\nNNLLNILLMQQGLPPATFYEPNVFDLYSAEELVVVVKEAIFNTVEIIEQSKRKTPITLYG\nYHSSLEEQTKFRDMLDSPSYEKIKHMDFSDLNPEKLHLKTQKCLSSLNEQYPLHRGAIYL\nSDPGEIKLLLSNRNESQINQQIEQGAPPIYVGKTPAHLAVISGNMAMLDELIAKKADLSL\nQDYDGKTALHYAAECGNMQIMGKILKVVLSQEDAIKVLNIKDNHGKTAFHYAAEFGTPEL\nISALTTTEVIQINEPDNSGSSAITLAYKNHKLKIFDELLNSGADISDELLDAIWARKDKE\nTLGKIIAKNEKILLNKEAFRIAISLGSVSLVKKFLRAGVDIDIPLTKDKATPLMLSINSG\nNPKLVSYLLKKGANTRLTDTSGNSVLHYVFYSKAENREALANIITEKDKKLINQPNANGN\nPPLYNAVVVNDLKMATILLEMGARVDFEDRLGNNILHSAMRRCDLPIILDIVKKDSTLLH\nKRNSERRNPFHQALHEMHTFPSSKETEEIHFMNLSDLLLKEGVDLNKKDIKGKTILDIAL\nSKQYFHLCVKLMKAGAHTNISSPSKFLKNSDANSILERPFKFKNDLKKELDNNPLIAMAQ\nINDLYVQIKNNRIRTPTGYAPKEGVSFFKGKSNDAKAHDEVLSVLKELYDSKLTEMLGNL\nPGEGLEEIKRSQKFFDGELKLLIKNQDISRKVDKKSIQEAVGTSLKLKW",
          "mw": 107.2,
          "total_mw": 107.2,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        }
      ],
      "buffer": {
        "name": "300 mM NaCl, 2 mM 2-mercaptoethanol and 30 mM Tris-HCl",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.5,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Legionella pneumophila Phosphocholinase AnkX",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": "Cachan, France",
            "full_name": "CNRS UMR8113, ENS Paris-Saclay",
            "webpage": "http://lbpa.ens-paris-saclay.fr/"
          }
        ],
        "contributor_name": "Wenhua",
        "contributor_surname": "Zhang",
        "orcid": null
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2017-10-20",
    "storage_temperature": null,
    "cell_temperature": null,
    "exposure_time": null,
    "number_of_frames": null,
    "wavelength": 0.09919,
    "sample_detector_distance": null,
    "concentration_min": null,
    "concentration_max": 8.0,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.179,
    "s_max": 2.06,
    "total_exposure_time": null,
    "seccolumn": null
  },
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    {
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        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDEU9_fit1_model1_img.png",
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          "model_mw": null,
          "bead_radius": 1.9,
          "log": "https://www.sasbdb.org/media/log_files/AnkX.log",
          "symmetry": "P1",
          "comment": null,
          "user": 84
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDEU9_fit1_fixed_fit_img.png",
      "software": "GASBOR",
      "chi_square_value": 1.05,
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      "fit_residual_plot": "SASDEU9_fit1_fitresiduals_img.png",
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      "fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/AnkX.log",
      "software_version": null,
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  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": "5.0",
  "i0_calibration_standard": null,
  "description": "X-ray exposure time = UNKNOWN. Sample temperature = UNKNOWN.",
  "experiment_description": "Synchrotron SAXS data from solutions of phosphocholinase AnkX in 300 mM NaCl, 2 mM 2-mercaptoethanol and 30 mM Tris-HCl, pH 7.5 were collected on the BM29 camera at the ESRF (Grenoble, France) using a Dectris Pilatus 1M detector at a wavelength of λ = 0.09919 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 8.00 mg/ml was measured. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
  "tags": [],
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  "guinier_rg_error": 0.03,
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  "pddf_dmax_error": null,
  "porod_volume": 145.0,
  "porod_volume_error": null,
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  "estimated_volume_error": null,
  "guinier_point_first": 3,
  "guinier_point_last": 26,
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  "symmetry": null,
  "last_modified": "2024-02-21T18:33:53.450280+01:00",
  "bragg_peak": []
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