SASDF25

R16-24 del45-55 human dystrophin fragment

Data type: SASBDB experimental data Status: Published Curve type: SEC-SAS Last updated: 2023-06-20T14:43:31.593077+02:00

SEC-SAXS was performed at 20°C using the following parameters: Column: BioSEC5-500Å (4.6 mm id * 300 mm); Flow rate: 0.2 mL/min; Sample injection concentration: ~8 mg/mL; Injection volume: 50μL. The data were collected through the SEC peak of the protein as a series of 21 x 1.5 second exposures. The experimental molecular weight was determined from the volume of correlation, Vc.

▼

1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · R16-24 del45-55 human dystrophin fragment

Concentration	— – —	Buffer / pH	NaP 20 mM, NaCl 300 mM, EDTA 1 mM, Glycérol 2% / 7.5
Experimental temperature	20.0	Facility / beamline	SOLEIL / SWING
Wavelength	0.1033 nm	Exposure	1.5 s × 21

Molecular Components

Component	Type / organism	UniProt and Construct	Oligomeric State	Molecular weight
Human dystrophin central domain R16-24 del45-55 fragment View sequence MSYYHHHHHHDYDIPTTENLYFOGAMGRSLVPRGSLEISYVPSTYLTEITHVSQALLEVEQLLNAPDLCAKDFEDLFKQEESLKNIKDSLQQSSGRIDIIHSKKTAALQSATPVERVKLQEALSQLDFQWEKVNKMYKDRQGRFDRSVEKWRRFHYDIKIFNQWLTEAEQFLRKTQIPENWEHAKYKWYLKDLQGEIEAHTDVYHNLDENSQKILRSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPVIMSTLETVRIFLTEQPLEGLEKLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLARQLTTLGIQLSPYNLSTLEDLNTRWKLLQVAVEDRVRQLHE	protein—	P115321990–3040	monomerMolecule count 1	58.102 kDa

Experimental Curves

Curve	Points / columns	q range	Uncertainty quality	Negative-intensity points	Source file
1	1065[3]	0.00677020008553–0.604807741997 1/A	Has uncertainty columnMissing 0	52	sasbdb/entries/25/sasdf25/source/SASDF25.dat

▼

2. Measurements Reported by SASBDB Reported Results

Metric	Method	Value	Uncertainty	Unit
dmax	P(r)	18.3	—	Å
i0	Guinier	1.03	—	arbitrary
i0	P(r)	1.074	—	arbitrary
mw	Experimental	61.0	—	kDa
rg	Guinier	4.67	—	Å
rg	P(r)	5.17	—	Å

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

▼

3. Source Fits and Models Source Fits & Models

This entry has no source fit record.

▶

4. Source File Index Source Files

Category	Path	Download status	Size
curve	sasbdb/entries/25/sasdf25/source/SASDF25.dat	downloaded	58627
full_entry_zip	sasbdb/entries/25/sasdf25/source/SASDF25.zip	downloaded	33799
pddf	sasbdb/entries/25/sasdf25/source/SASDF25.out	downloaded	36884
sascif	sasbdb/entries/25/sasdf25/source/SASDF25.sascif	downloaded	88451
summary	sasbdb/entries/25/sasdf25/source/summary.json	downloaded	10060

▶

5. Experiment Description and Publication Experiment & Publication

▼

6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name	NaP 20 mM, NaCl 300 mM, EDTA 1 mM, Glycérol 2%	Buffer concentration	—
pH	7.5	Additives	—
Buffer description	—
Purity measurement method	—	Extinction coefficient	—
Absorbance	—	Scattering contrast	—
Specific volume / dry volume	— / —	Mixture / deuteration	— / —

Acquisition Conditions and Instrument

Measurement date	2017-09-28	Storage / measurement temperature	— / 20.0
Exposure time	1.5	Frames	21
Wavelength	0.1033	Sample-to-detector distance	1.8
Source	X-ray synchrotron	Detector	AVIEX PCCD170170
Facility / beamline	SOLEIL / SWING · Saint-Aubin, France
q range	0.068 – 6.048	Sample volume / flow rate	— / —

Original SASBDB Plots

Downloadable Files

Category	File	Status	Size	Checksum	Download and View
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full_entry_zip	sasbdb/entries/25/sasdf25/source/SASDF25.zip	downloaded	33799	0475e3afdb60b52c2b9b2c4ab4e926f293493a9172dd89034912c7d6d851d8d7	DownloadView source fileSource site
pddf	sasbdb/entries/25/sasdf25/source/SASDF25.out	downloaded	36884	fe4575a79fa54d53551ad8c773c841a22e0230af6971ff3e28cec4b36ecf1f1a	DownloadView source fileSource site
sascif	sasbdb/entries/25/sasdf25/source/SASDF25.sascif	downloaded	88451	74aed43653c57ac6ed250b7ada573789305742026c2abe794af6f5bd9e5c559d	DownloadView source fileSource site
summary	sasbdb/entries/25/sasdf25/source/summary.json	downloaded	10060	9ea701e18e16d75dc7bddf1be12b6f1380c8a39a8468a437588f39a162a53cf4	DownloadView source fileSource site

curve：source record

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  "role": "curve",
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full_entry_zip：source record and ZIP contents (2 items)

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  "url": "https://www.sasbdb.org/media/zip_directories/SASDF25.zip",
  "zip_member_count": 2,
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pddf：source record

{
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  "role": "pddf",
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sascif：source record

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summary：source record

{
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}

All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json：129 field values

Field path	Raw value
code	SASDF25
status	Published
type_of_curve	SEC-SAS
angular_unit	1/A
project.title	Dystrophin SAXS data
project.publication	null
project.status	released
project.submitted_date	2019-03-30
project.released_date	2023-03-30
pddf_data	https://www.sasbdb.org/media/p_of_R_files/SASDF25.out
intensities_data	https://www.sasbdb.org/media/intensities_files/SASDF25.dat
intensities_log_plot	https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDF25_dat_img.png
intensities_kratky_plot	https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDF25_kratky_img.png
pddf_plot	https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDF25_pofr_img.png
intensities_guinier_plot	https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDF25_guinier_img.png
sascif_data	https://www.sasbdb.org/media/sascif/sascif_files/SASDF25.sascif
experiment.instrument.detector.type	CCD
experiment.instrument.detector.name	AVIEX PCCD170170
experiment.instrument.detector.resolution	null
experiment.instrument.name	SOLEIL
experiment.instrument.city	Saint-Aubin
experiment.instrument.country	France
experiment.instrument.beamline_name	SWING
experiment.instrument.beam_geometry
experiment.instrument.type_of_source	X-ray synchrotron
experiment.instrument.point_source	null
experiment.instrument.line_collimation	null
experiment.instrument.sample_path_length	null
experiment.instrument.line_collimation_slitlength	null
experiment.instrument.line_collimation_integrationwidth	null
experiment.instrument.xray_energy	null
experiment.instrument.beam_profile_ah	null
experiment.instrument.beam_profile_al	null
experiment.sample.molecule[0].long_name	Human dystrophin central domain R16-24 del45-55 fragment
experiment.sample.molecule[0].short_name	null
experiment.sample.molecule[0].sequence	MSYYHHHHHHDYDIPTTENLYFOGAMGRSLVPRGSLEISYVPSTYLTEITHVSQALLEVEQLLNAPDLCAKDFEDLFKQEESLKNIKDSLQQSSGRIDIIHSKKTAALQSATPVERVKLQEALSQLDFQWEKVNKMYKDRQGRFDRSVEKWRRFHYDIKIFNQWLTEAEQFLRKTQIPENWEHAKYKWYLKDLQGEIEAHTDVYHNLDENSQKILRSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPVIMSTLETVRIFLTEQPLEGLEKLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLARQLTTLGIQLSPYNLSTLEDLNTRWKLLQVAVEDRVRQLHE
experiment.sample.molecule[0].organism	null
experiment.sample.molecule[0].uniprot_code	P11532
experiment.sample.molecule[0].uniprot_range_first	1990
experiment.sample.molecule[0].uniprot_range_last	3040
experiment.sample.molecule[0].oligomerization	monomer
experiment.sample.molecule[0].molecular_type	protein
experiment.sample.molecule[0].uniprot_sequence	MLWWEEVEDCYEREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQ KLPKEKGSTRVHALNNVNKALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIILHWQV KNVMKNIMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDL FDWNSVVCQQSATQRLEHAFNIARYQLGIEKLLDPEDVDTTYPDKKSILMYITSLFQVLP QQVSIEAIQEVEMLPRPPKVTKEEHFQLHHQMHYSQQITVSLAQGYERTSSPKPRFKSYA YTQAAYVTTSDPTRSPFPSQHLEAPEDKSFGSSLMESEVNLDRYQTALEEVLSWLLSAED TLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEV QEQMNLLNSRWECLRVASMEKQSNLHRVLMDLQNQKLKELNDWLTKTEERTRKMEEEPLG PDLEDLKRQVQQHKVLQEDLEQEQVRVNSLTHMVVVVDESSGDHATAALEEQLKVLGDRW ANICRWTEDRWVLLQDILLKWQRLTEEQCLFSAWLSEKEDAVNKIHTTGFKDQNEMLSSL QKLAVLKADLEKKKQSMGKLYSLKQDLLSTLKNKSVTQKTEAWLDNFARCWDNLVQKLEK STAQISQAVTTTQPSLTQTTVMETVTTVTTREQILVKHAQEELPPPPPQKKRQITVDSEI RKRLDVDITELHSWITRSEAVLQSPEFAIFRKEGNFSDLKEKVNAIEREKAEKFRKLQDA SRSAQALVEQMVNEGVNADSIKQASEQLNSRWIEFCQLLSERLNWLEYQNNIIAFYNQLQ QLEQMTTTAENWLKIQPTTPSEPTAIKSQLKICKDEVNRLSDLQPQIERLKIQSIALKEK GQGPMFLDADFVAFTNHFKQVFSDVQAREKELQTIFDTLPPMRYQETMSAIRTWVQQSET KLSIPQLSVTDYEIMEQRLGELQALQSSLQEQQSGLYYLSTTVKEMSKKAPSEISRKYQS EFEEIEGRWKKLSSQLVEHCQKLEEQMNKLRKIQNHIQTLKKWMAEVDVFLKEEWPALGD SEILKKQLKQCRLLVSDIQTIQPSLNSVNEGGQKIKNEAEPEFASRLETELKELNTQWDH MCQQVYARKEALKGGLEKTVSLQKDLSEMHEWMTQAEEEYLERDFEYKTPDELQKAVEEM KRAKEEAQQKEAKVKLLTESVNSVIAQAPPVAQEALKKELETLTTNYQWLCTRLNGKCKT LEEVWACWHELLSYLEKANKWLNEVEFKLKTTENIPGGAEEISEVLDSLENLMRHSEDNP NQIRILAQTLTDGGVMDELINEELETFNSRWRELHEEAVRRQKLLEQSIQSAQETEKSLH LIQESLTFIDKQLAAYIADKVDAAQMPQEAQKIQSDLTSHEISLEEMKKHNQGKEAAQRV LSQIDVAQKKLQDVSMKFRLFQKPANFEQRLQESKMILDEVKMHLPALETKSVEQEVVQS QLNHCVNLYKSLSEVKSEVEMVIKTGRQIVQKKQTENPKELDERVTALKLHYNELGAKVT ERKQQLEKCLKLSRKMRKEMNVLTEWLAATDMELTKRSAVEGMPSNLDSEVAWGKATQKE IEKQKVHLKSITEVGEALKTVLGKKETLVEDKLSLLNSNWIAVTSRAEEWLNLLLEYQKH METFDQNVDHITKWIIQADTLLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAAN LMANRGDHCRKLVEPQISELNHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAE IQQGVNLKEEDFNKDMNEDNEGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNA LKDLRSQRRKKALEISHQWYQYKRQADDLLKCLDDIEKKLASLPEPRDERKIKEIDRELQ KKKEELNAVRRQAEGLSEDGAAMAVEPTQIQLSKRWREIESKFAQFRRLNFAQIHTVREE TMMVMTEDMPLEISYVPSTYLTEITHVSQALLEVEQLLNAPDLCAKDFEDLFKQEESLKN IKDSLQQSSGRIDIIHSKKTAALQSATPVERVKLQEALSQLDFQWEKVNKMYKDRQGRFD RSVEKWRRFHYDIKIFNQWLTEAEQFLRKTQIPENWEHAKYKWYLKELQDGIGQRQTVVR TLNATGEEIIQQSSKTDASILQEKLGSLNLRWQEVCKQLSDRKKRLEEQKNILSEFQRDL NEFVLWLEEADNIASIPLEPGKEQQLKEKLEQVKLLVEELPLRQGILKQLNETGGPVLVS APISPEEQDKLENKLKQTNLQWIKVSRALPEKQGEIEAQIKDLGQLEKKLEDLEEQLNHL LLWLSPIRNQLEIYNQPNQEGPFDVKETEIAVQAKQPDVEEILSKGQHLYKEKPATQPVK RKLEDLSSEWKAVNRLLQELRAKQPDLAPGLTTIGASPTQTVTLVTQPVVTKETAISKLE MPSSLMLEVPALADFNRAWTELTDWLSLLDQVIKSQRVMVGDLEDINEMIIKQKATMQDL EQRRPQLEELITAAQNLKNKTSNQEARTIITDRIERIQNQWDEVQEHLQNRRQQLNEMLK DSTQWLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVA NDLALKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQFPLDLEK FLAWLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQ KILRSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVW LQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPVIMSTLETVRIFLTEQPLEG LEKLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQ EATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLAR QLTTLGIQLSPYNLSTLEDLNTRWKLLQVAVEDRVRQLHEAHRDFGPASQHFLSTSVQGP WERAISPNKVPYYINHETQTTCWDHPKMTELYQSLADLNNVRFSAYRTAMKLRRLQKALC LDLLSLSAACDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHNNLVNVPLCVDMCLN WLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVASSTGFCDQRRLGLLLHD SIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMRLEPQSMVWLPVLHR VAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRVAKGHKMHYPMVEYC TPTTSGEDVRDFAKVLKNKFRTKRYFAKHPRMGYLPVQTVLEGDNMETPVTLINFWPVDS APASSPQLSHDDTHSRIEHYASRLAEMENSNGSYLNDSISPNESIDDEHLLIQHYCQSLN QDSPLSQPRSPAQILISLESEERGELERILADLEEENRNLQAEYDRLKQQHEHKGLSPLP SPPEMMPTSPQSPRDAELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHRLRQLLEQP QAEAKVNGTTVSSPSTSLQRSDSSQPMLLRVVGSQTSDSMGEEDLLSPPQDTSTGLEEVM EQLNNSFPSSRGRNTPGKPMREDTM
experiment.sample.molecule[0].mw	58.102
experiment.sample.molecule[0].total_mw	58.102
experiment.sample.molecule[0].number_molecules	1
experiment.sample.molecule[0].complex_state	False
experiment.sample.molecule[0].deuteration	null
experiment.sample.molecule[0].molecule_source	biological
experiment.sample.molecule[0].molecule_description	null
experiment.sample.buffer.name	NaP 20 mM, NaCl 300 mM, EDTA 1 mM, Glycérol 2%
experiment.sample.buffer.concentration_unit	null
experiment.sample.buffer.comment	null
experiment.sample.buffer.additive	null
experiment.sample.buffer.concentration	null
experiment.sample.buffer.pka	null
experiment.sample.buffer.ph	7.5
experiment.sample.buffer.deuteration	null
experiment.sample.purity_method	null
experiment.sample.name	R16-24 del45-55 human dystrophin fragment
experiment.sample.ext_coefficient	null
experiment.sample.contrast	null
experiment.sample.specific_vol	null
experiment.sample.dry_vol	null
experiment.sample.absorbption	null
experiment.sample.deuteration	null
experiment.sample.mixture	null
experiment.contributor[0].affiliation[0].short_name	null
experiment.contributor[0].affiliation[0].address	France
experiment.contributor[0].affiliation[0].full_name	University of Lorraine
experiment.contributor[0].affiliation[0].webpage	http://welcome.univ-lorraine.fr/
experiment.contributor[0].contributor_name	Raphael
experiment.contributor[0].contributor_surname	Dos Santos Morais
experiment.contributor[0].orcid
experiment.concentration_method	null
experiment.concentration_unit	null
experiment.date	2017-09-28
experiment.storage_temperature	null
experiment.cell_temperature	20.0
experiment.exposure_time	1.5
experiment.number_of_frames	21
experiment.wavelength	0.1033
experiment.sample_detector_distance	1.8
experiment.concentration_min	null
experiment.concentration_max	null
experiment.sample_volume	null
experiment.flow_rate	null
experiment.s_min	0.068
experiment.s_max	6.048
experiment.total_exposure_time	null
experiment.seccolumn	null
fits	[]
estimated_volume_method	null
pddf_software	ATSAS GNOM
pddf_software_version	4.6
i0_calibration_standard	null
description	SEC-SAXS was performed at 20°C using the following parameters: Column: BioSEC5-500Å (4.6 mm id * 300 mm); Flow rate: 0.2 mL/min; Sample injection concentration: ~8 mg/mL; Injection volume: 50μL. The data were collected through the SEC peak of the protein as a series of 21 x 1.5 second exposures. The experimental molecular weight was determined from the volume of correlation, Vc.
experiment_description	Synchrotron SAXS data from solutions of the R16-24 del45-55 human dystrophin fragment in NaP 20 mM, NaCl 300 mM, EDTA 1 mM, glycerol 2%, pH 7.5 were collected using size-exclusion chromatography SAXS (SEC-SAXS) on the SWING beam line at SOLEIL (Saint-Aubin, France) using a CCD AVIEX PCCD170170 detector at a sample-detector distance of 1.8 m and at a wavelength of λ = 0.1033 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.
tags	[]
intensity_unit	arbitrary
experimental_mw	61.0
experimental_mw_error	null
guinier_i0_mw	null
guinier_i0_mw_error	null
porod_mw	null
porod_mw_error	null
pddf_i0	1.074
pddf_i0_error	null
guinier_i0	1.03
guinier_i0_error	null
pddf_rg	5.17
pddf_rg_error	null
guinier_rg	4.67
guinier_rg_error	null
pddf_dmax	18.3
pddf_dmax_error	null
porod_volume	null
porod_volume_error	null
estimated_volume	null
estimated_volume_error	null
guinier_point_first	null
guinier_point_last	null
pddf_point_first	null
pddf_point_last	null
i0_calibration_standard_data	null
intensities_log_log_plot	SASDF25_datloglog_img.png
symmetry	null
last_modified	2023-06-20T14:43:31.593077+02:00
bragg_peak	[]

manifest.json：36 field values

Field path	Raw value
code	SASDF25
status	success
started_at	2026-08-11T14:35:51.562451+00:00
finished_at	2026-08-11T14:36:01.084854+00:00
source_last_modified	2023-06-20T14:43:31.593077+02:00
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View the complete summary.json source

{
  "code": "SASDF25",
  "status": "Published",
  "type_of_curve": "SEC-SAS",
  "angular_unit": "1/A",
  "project": {
    "title": "Dystrophin SAXS data",
    "publication": null,
    "status": "released",
    "submitted_date": "2019-03-30",
    "released_date": "2023-03-30"
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      "name": "R16-24 del45-55 human dystrophin fragment",
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          {
            "short_name": null,
            "address": "France",
            "full_name": "University of Lorraine",
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    "date": "2017-09-28",
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  "symmetry": null,
  "last_modified": "2023-06-20T14:43:31.593077+02:00",
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}

View the complete manifest.json source

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