SASDFB9

Poly-adenosine rA30 in 100 mM NaCl

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Extrapolated to infinite dilution 最后更新:2019-12-11T18:17:14.164307+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Poly-adenosine rA30 in 100 mM NaCl

浓度0.4 – 1.2 缓冲液 / pH1 mM Na-MOPS, 100 mM NaCl, 20 µM EDTA / 7.0
实验温度25.0 设备 / 束线Cornell High Energy Synchrotron Source (CHESS) / G1
波长0.11 nm曝光10.0 s × 30

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Poly-adenosine
查看序列
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
RNA———–—monomer分子数 19.894 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1261[3]0.01–0.27 1/A含误差列缺失 00sasbdb/entries/b9/sasdfb9/source/SASDFB9.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)10.72—Å
i0Guinier33.270.38—
i0P(r)33.83——
mwExperimental14.0—kDa
porod_volumePorod14.0—ų
rgGuinier2.440.03Å
rgP(r)2.61—Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

拟合 1 · EOM/GAJOE

χ²:0.944784CorMap p:0.877594单位:1/A
模型名称 / 类型软件对称性模型 MWPDB 声明来源文件
1—atomicCustom in-house —9.451—模型 图片
2—atomicCustom in-house —9.451—模型 图片
3—atomicCustom in-house —9.451—模型 图片
4—atomicCustom in-house —9.451—模型 图片
5—atomicCustom in-house —9.451—模型 图片
6—atomicCustom in-house —9.451—模型 图片
7—atomicCustom in-house —9.451—模型 图片
8—atomicCustom in-house —9.451—模型 图片
9—atomicCustom in-house —9.451—模型 图片
10—atomicCustom in-house —9.451—模型 图片
11—atomicCustom in-house —9.451—模型 图片
12—atomicCustom in-house —9.451—模型 图片
13—atomicCustom in-house —9.451—模型 图片
14—atomicCustom in-house —9.451—模型 图片
15—atomicCustom in-house —9.451—模型 图片
16—atomicCustom in-house —9.451—模型 图片
17—atomicCustom in-house —9.451—模型 图片
18—atomicCustom in-house —9.451—模型 图片
19—atomicCustom in-house —9.451—模型 图片
20—atomicCustom in-house —9.451—模型 图片
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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称1 mM Na-MOPS, 100 mM NaCl, 20 µM EDTA缓冲液浓度—
pH7.0添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2015-10-25储存 / 测量温度4.0 / 25.0
曝光时间10.0帧数30
波长0.11样品-探测器距离2.04
光源X-ray synchrotron探测器Finger Lakes CCD
机构 / 束线Cornell High Energy Synchrotron Source (CHESS) / G1 · Ithaca, NY, USA
q 范围0.1 – 2.7样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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summarysasbdb/entries/b9/sasdfb9/source/summary.jsondownloaded17358957e5e047111b2ef695b48591d77779cc6be42901ab0d7f61d72b34f058e782d下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(23 项)
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pddf:来源记录
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sascif:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:403 个字段值
字段路径原始值
codeSASDFB9
statusPublished
type_of_curveExtrapolated to infinite dilution
angular_unit1/A
project.titleVisualizing disordered single-stranded RNA: connecting sequence, structure and electrostatics.
project.publication.titleVisualizing disordered single-stranded RNA: connecting sequence, structure and electrostatics.
project.publication.author_listPlumridge A, Andresen K, Pollack L
project.publication.journalJ Am Chem Soc
project.publication.doi10.1021/jacs.9b04461
project.publication.pmid31804813
project.publication.published_date2019 Dec 5
project.statusreleased
project.submitted_date2019-07-09
project.released_date2019-12-11
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experiment.instrument.detector.nameFinger Lakes CCD
experiment.instrument.detector.resolution0.0
experiment.instrument.nameCornell High Energy Synchrotron Source (CHESS)
experiment.instrument.cityIthaca, NY
experiment.instrument.countryUSA
experiment.instrument.beamline_nameG1
experiment.instrument.beam_geometry
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_namePoly-adenosine
experiment.sample.molecule[0].short_namerA30
experiment.sample.molecule[0].sequenceAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
experiment.sample.molecule[0].organismnull
experiment.sample.molecule[0].uniprot_codenull
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeRNA
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experiment.sample.molecule[0].mw9.894
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experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
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experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
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experiment.sample.ext_coefficientnull
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experiment.contributor[0].affiliation[0].short_namenull
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experiment.contributor[0].affiliation[0].full_nameCornell University
experiment.contributor[0].affiliation[0].webpagehttps://www.cornell.edu/
experiment.contributor[0].contributor_nameAlex
experiment.contributor[0].contributor_surnamePlumridge
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
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experiment.date2015-10-25
experiment.storage_temperature4.0
experiment.cell_temperature25.0
experiment.exposure_time10.0
experiment.number_of_frames30
experiment.wavelength0.11
experiment.sample_detector_distance2.04
experiment.concentration_min0.4
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查看完整 summary.json 原文
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查看完整 manifest.json 原文
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