查看完整 summary.json 原文
{
"code": "SASDFF6",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "Regulation of futile ligation during early steps of BER in M. tuberculosis is carried out by a β-clamp-XthA-LigA tri-component complex",
"publication": {
"title": "Regulation of futile ligation during early steps of BER in M. tuberculosis is carried out by a β-clamp-XthA-LigA tri-component complex",
"author_list": "Shukla A, Afsar M, Khanam T, Kumar N, Ali F, Kumar S, Jahan F, Ramachandran R",
"journal": "International Journal of Biological Macromolecules",
"doi": "10.1016/j.ijbiomac.2022.11.094",
"pmid": null,
"published_date": "2022 Nov"
},
"status": "released",
"submitted_date": "2019-05-24",
"released_date": "2021-09-27"
},
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"name": "Pilatus 1M",
"resolution": 172.0
},
"name": "ESRF",
"city": "Grenoble",
"country": "France",
"beamline_name": "BM29",
"beam_geometry": "",
"type_of_source": "X-ray synchrotron",
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{
"long_name": "Beta sliding clamp",
"short_name": null,
"sequence": "MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPGHHHHHH",
"organism": "Mycobacterium tuberculosis",
"uniprot_code": "P9WNU1",
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"uniprot_range_last": 402,
"oligomerization": "dimer",
"molecular_type": "protein",
"uniprot_sequence": "MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFD\nYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPT\nMPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA\nTDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLL\nGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRME\nFADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAG\nKPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG",
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},
{
"long_name": "Probable exodeoxyribonuclease III protein XthA (Exonuclease III) (EXO III) (AP endonuclease VI)",
"short_name": null,
"sequence": "MPDGTIDGGHPQRPASPRLRSPLLRLATWNVNSIRTRLDRVLDWLGRADV DVLAMQETKCPDGQFPALPLFELGYDVAHVGFDQWNGVAIASRVGLDDVR VGFDGQPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRALDDPHYT YKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCT HVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRI DFILGSPALAARVMDAQIVREERKGKAPSDHAPVLVDLHAGHHHHHH",
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"uniprot_code": "P96273",
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"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MPDGTIDGGHPQRPASPRLRSPLLRLATWNVNSIRTRLDRVLDWLGRADVDVLAMQETKC\nPDGQFPALPLFELGYDVAHVGFDQWNGVAIASRVGLDDVRVGFDGQPSWSGKPEVAATTE\nARALGATCGGIRVWSLYVPNGRALDDPHYTYKLDWLAALRDTAEGWLRDDPAAPIALMGD\nWNIAPTDDDVWSTEFFAGCTHVSEPERKAFNAIVDAQFTDVVRPFTPGPGVYTYWDYTQL\nRFPKKQGMRIDFILGSPALAARVMDAQIVREERKGKAPSDHAPVLVDLHAG",
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"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
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"comment": null,
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"concentration": null,
"pka": null,
"ph": 8.0,
"deuteration": null
},
"purity_method": null,
"name": "Probable exodeoxyribonuclease III protein XthA, sliding beta clamp complex",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "India",
"full_name": "CSIR - Central Drug Research Institute",
"webpage": "https://cdri.res.in/"
}
],
"contributor_name": "Ravishankar",
"contributor_surname": "Ramachandran",
"orcid": ""
}
],
"concentration_method": null,
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"date": "2017-05-15",
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"cell_temperature": 10.0,
"exposure_time": 1.0,
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"wavelength": 0.0992,
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},
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{
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{
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"software": "DAMMIF",
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}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDFF6_fit1_fixed_fit_img.png",
"software": "DAMMIF",
"chi_square_value": 0.774,
"p_value": 0.340933,
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"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDFF6_fit1.fir",
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}
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"pddf_software": "ATSAS GNOM",
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"i0_calibration_standard": null,
"description": "The presented model shows the spatial alignment of several individually calculated models and does not fit the SAXS data. A corresponding individual model fit (individual model not provided for this entry) is shown.",
"experiment_description": "Synchrotron SAXS data from solutions of probable exodeoxyribonuclease III protein XthA bound to sliding beta clamp in 50 mM Tris-HCl, 200 mM NaCl, 2 mM β-mercaptoethanol, pH 8 were collected on the BM29 beam line at the ESRF storage ring (Grenoble, France) using a Pilatus 1M detector at a sample-detector distance of 2.9 m and at a wavelength of λ = 0.0992 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 2.50 mg/ml was measured at 10°C. 10 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
"tags": [],
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"porod_volume": 98.0,
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"estimated_volume": null,
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"guinier_point_first": 32,
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"pddf_point_first": null,
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"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDFF6_datloglog_img.png",
"symmetry": null,
"last_modified": "2022-11-17T09:57:12.325311+01:00",
"bragg_peak": []
}查看完整 manifest.json 原文
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