SASDGB7

Toxoplasma gondii Membrane Occupation and Recognition Nexus (MORN1) repeats 7-15

Data type: SASBDB experimental data Status: Published Curve type: SEC-SAS Last updated: 2023-06-21T07:56:39.492710+02:00
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1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · Toxoplasma gondii Membrane Occupation and Recognition Nexus (MORN1) repeats 7-15

Concentration— – 2.6 Buffer / pH20 mM Tris-HCl, 100 mM NaCl / 7.5
Experimental temperature20.0 Facility / beamlinePETRA III / EMBL P12
Wavelength0.12 nmExposure1.0 s × 6

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
Toxoplasma gondii Membrane Occupation and Recognition Nexus (MORN1) repeats 7-15
View sequence
EKYEGDWVNGKMHGHGKYIYSDGGVYEGDWIDGKMHGKGTYVFPNGNVYEGEWAHDMKDGYGVLTYQNGEKYEGYWKQDKVHGKGTLTYTRGDKYIGDWMDAKKDGEGELIYANGDRFKGQWADDRANGFGVFTYANGNRYEGEWTDDKRHGRGVFYCAEDGSAYEGEFVGGRKEGNGILRLATGHQLEGTWSGGQLVRVTSFVFAQDSPWLNVDL
proteinToxoplasma gondiiA0A0F7VBC648–363dimerMolecule count 224.358 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
11581[3]0.0795628–4.38459 1/nmHas uncertainty columnMissing 05sasbdb/entries/b7/sasdgb7/source/SASDGB7.dat
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2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)17.0—nm
i0Guinier4757.1411.08arbitrary
i0P(r)4844.0—arbitrary
mwExperimental50.0—kDa
mwPorod33.0—kDa
porod_volumePorod55.0—nm³
rgGuinier4.00.03nm
rgP(r)4.34—nm

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

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3. Source Fits and Models Source Fits & Models

Fit 2 · CRYSOL

χ²: 1.321CorMap p: 0.0Unit: 1/A
ModelName / TypeSoftwareSymmetryModel MWPDB DeclarationSource file
1—atomicCustom in-house —46.83—Model Image
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4. Source File Index Source Files

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5. Experiment Description and Publication Experiment & Publication

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6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name20 mM Tris-HCl, 100 mM NaClBuffer concentration—
pH7.5Additives—
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2016-06-10Storage / measurement temperature— / 20.0
Exposure time1.0Frames6
Wavelength0.12Sample-to-detector distance3.0
SourceX-ray synchrotronDetectorPilatus 2M
Facility / beamlinePETRA III / EMBL P12 · DESY; Hamburg, Germany
q range0.08 – 4.385Sample volume / flow rate100.0 / 0.5

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

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All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:179 field values
Field pathRaw value
codeSASDGB7
statusPublished
type_of_curveSEC-SAS
angular_unit1/nm
project.titleStructures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats.
project.publication.titleStructures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats.
project.publication.author_listSajko S, Grishkovskaya I, Kostan J, Graewert M, Setiawan K, Trübestein L, Niedermüller K, Gehin C, Sponga A, Puchinger M, Gavin AC, Leonard TA, Svergun DI, Smith TK, Morriswood B, Djinovic-Carugo K
project.publication.journalPLoS One
project.publication.doi10.1371/journal.pone.0242677
project.publication.pmid33296386
project.publication.published_date2020
project.statusreleased
project.submitted_date2019-10-01
project.released_date2020-01-23
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experiment.sample.molecule[0].long_nameToxoplasma gondii Membrane Occupation and Recognition Nexus (MORN1) repeats 7-15
experiment.sample.molecule[0].short_nametg MORN1 delta6
experiment.sample.molecule[0].sequenceEKYEGDWVNGKMHGHGKYIYSDGGVYEGDWIDGKMHGKGTYVFPNGNVYEGE WAHDMKDGYGVLTYQNGEKYEGYWKQDKVHGKGTLTYTRGDKYIGDWMDAKK DGEGELIYANGDRFKGQWADDRANGFGVFTYANGNRYEGEWTDDKRHGRGVFY CAEDGSAYEGEFVGGRKEGNGILRLATGHQLEGTWSGGQLVRV TSFVFAQDSPWLNVDL
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experiment.sample.molecule[0].uniprot_codeA0A0F7VBC6
experiment.sample.molecule[0].uniprot_range_first48
experiment.sample.molecule[0].uniprot_range_last363
experiment.sample.molecule[0].oligomerizationdimer
experiment.sample.molecule[0].molecular_typeprotein
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experiment.contributor[0].affiliation[0].addressNotkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_nameMelissa
experiment.contributor[0].contributor_surnameGraewert
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tags[]
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manifest.json:36 field values
Field pathRaw value
codeSASDGB7
statussuccess
started_at2026-08-11T15:26:00.014358+00:00
finished_at2026-08-11T15:26:12.115484+00:00
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View the complete summary.json source
{
  "code": "SASDGB7",
  "status": "Published",
  "type_of_curve": "SEC-SAS",
  "angular_unit": "1/nm",
  "project": {
    "title": "Structures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats.",
    "publication": {
      "title": "Structures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats.",
      "author_list": "Sajko S, Grishkovskaya I, Kostan J, Graewert M, Setiawan K, Trübestein L, Niedermüller K, Gehin C, Sponga A, Puchinger M, Gavin AC, Leonard TA, Svergun DI, Smith TK, Morriswood B, Djinovic-Carugo K",
      "journal": "PLoS One",
      "doi": "10.1371/journal.pone.0242677",
      "pmid": "33296386",
      "published_date": "2020"
    },
    "status": "released",
    "submitted_date": "2019-10-01",
    "released_date": "2020-01-23"
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          "long_name": "Toxoplasma gondii Membrane Occupation and Recognition Nexus (MORN1) repeats 7-15",
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View the complete manifest.json source
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