SASDGC7

Plasmodium falciparum Membrane Occupation and Recognition Nexus (MORN1) repeats 7-15

Data type: SASBDB experimental data Status: Published Curve type: Single concentration Last updated: 2023-06-21T07:56:39.492710+02:00
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1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · Plasmodium falciparum Membrane Occupation and Recognition Nexus (MORN1) repeats 7-15

Concentration— – 1.0 Buffer / pH20 mM Tris-HCl, 100 mM NaCl / 7.5
Experimental temperature10.0 Facility / beamlinePETRA III / EMBL P12
Wavelength0.12 nmExposure0.05 s × 20

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
MORN repeat-containing protein 1
View sequence
GRGTYFFADGGIYEGDWVDGKMEGKGVYKYLNGNKYEGEWINDMKNGYGTLAYVNGELYEGYWKNDKVHGKGTLTYSKGDKYIGEWKYAKKCGEGELIYASGDKFKGQWKNDKANGYGILLYNNGNKYEGEWLDDHRHGMGTFTCKEDGTIYSGHFQFNRKHGKGTLTFVNGHILQGIWNSGLLEKVINYELTPSSPWNDPDL
proteinPlasmodium falciparumQ8IJ93162–364dimerMolecule count 223.074 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
11176[3]0.0890772–3.33956 1/nmHas uncertainty columnMissing 010sasbdb/entries/c7/sasdgc7/source/SASDGC7.dat
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2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)16.0—nm
i0Guinier0.0580.000321/cm
i0P(r)0.05974—1/cm
mwExperimental32.0—kDa
mwGuinier I(0)52.0—kDa
mwPorod33.0—kDa
porod_volumePorod52.0—nm³
rgGuinier3.820.13nm
rgP(r)4.173—nm

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

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3. Source Fits and Models Source Fits & Models

Fit 1 · DAMMIN

χ²: 1.126CorMap p: 0.082356Unit: 1/A
ModelName / TypeSoftwareSymmetryModel MWPDB DeclarationSource file
1—dummyDAMMIN SUPCOMB 23 (r9988)—31.699—Model Image Log
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4. Source File Index Source Files

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5. Experiment Description and Publication Experiment & Publication

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6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name20 mM Tris-HCl, 100 mM NaClBuffer concentration—
pH7.5Additives—
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2017-12-02Storage / measurement temperature10.0 / 10.0
Exposure time0.05Frames20
Wavelength0.12Sample-to-detector distance3.0
SourceX-ray synchrotronDetectorPilatus 2M
Facility / beamlinePETRA III / EMBL P12 · DESY; Hamburg, Germany
q range0.089 – 3.34Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

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All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:179 field values
Field pathRaw value
codeSASDGC7
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleStructures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats.
project.publication.titleStructures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats.
project.publication.author_listSajko S, Grishkovskaya I, Kostan J, Graewert M, Setiawan K, Trübestein L, Niedermüller K, Gehin C, Sponga A, Puchinger M, Gavin AC, Leonard TA, Svergun DI, Smith TK, Morriswood B, Djinovic-Carugo K
project.publication.journalPLoS One
project.publication.doi10.1371/journal.pone.0242677
project.publication.pmid33296386
project.publication.published_date2020
project.statusreleased
project.submitted_date2019-10-01
project.released_date2020-01-23
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experiment.instrument.detector.resolutionnull
experiment.instrument.namePETRA III
experiment.instrument.cityDESY; Hamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL P12
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
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experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
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experiment.sample.molecule[0].long_nameMORN repeat-containing protein 1
experiment.sample.molecule[0].short_namepf MORN1 delta 6
experiment.sample.molecule[0].sequenceGRGTYFFADGGIYEGDWVDGKMEGKGVYKYLNGNKYEG EWINDMKNGYGTLAYVNGELYEGYWKNDKVHGKGTLTY SKGDKYIGEWKYAKKCGEGELIYASGDKFKGQWKNDKAN GYGILLYNNGNKYEGEWLDDHRHGMGTFTCKEDGTIYSG HFQFNRKHGKGTLTFVNGHILQGIWNSGLLEKVINYELTPS SPWNDPDL
experiment.sample.molecule[0].organismPlasmodium falciparum
experiment.sample.molecule[0].uniprot_codeQ8IJ93
experiment.sample.molecule[0].uniprot_range_first162
experiment.sample.molecule[0].uniprot_range_last364
experiment.sample.molecule[0].oligomerizationdimer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMTEVTHCYNGNIKDGLFHGFGILIYSQHEKYEGDFVYGKREGRGKFTYADGATYEGEWVD DKIHGKGIANFVSGNIYEGEWENGKINGFGMLCYNNGDKYEGEWLDGKMHGRGTYTYEDG DVYIGEWKNDKRHGKGCVKYKGNENKIAETYEGDWVDGKMQGRGTYFFADGGIYEGDWVD GKMEGKGVYKYLNGNKYEGEWINDMKNGYGTLAYVNGELYEGYWKNDKVHGKGTLTYSKG DKYIGEWKYAKKCGEGELIYASGDKFKGQWKNDKANGYGILLYNNGNKYEGEWLDDHRHG MGTFTCKEDGTIYSGHFQFNRKHGKGTLTFVNGHILQGIWNSGLLEKVINYELTPSSPWN DPDL
experiment.sample.molecule[0].mw23.074
experiment.sample.molecule[0].total_mw46.148
experiment.sample.molecule[0].number_molecules2
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name20 mM Tris-HCl, 100 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
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experiment.sample.buffer.pkanull
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experiment.sample.namePlasmodium falciparum Membrane Occupation and Recognition Nexus (MORN1) repeats 7-15
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
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experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameEMBL-Hamburg
experiment.contributor[0].affiliation[0].addressNotkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_nameMelissa
experiment.contributor[0].contributor_surnameGraewert
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2017-12-02
experiment.storage_temperature10.0
experiment.cell_temperature10.0
experiment.exposure_time0.05
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experiment.wavelength0.12
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experiment_descriptionnull
tags[]
intensity_unit1/cm
experimental_mw32.0
experimental_mw_errornull
guinier_i0_mw52.0
guinier_i0_mw_errornull
porod_mw33.0
porod_mw_errornull
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pddf_i0_errornull
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symmetrynull
last_modified2023-06-21T07:56:39.492710+02:00
bragg_peak[]
manifest.json:36 field values
Field pathRaw value
codeSASDGC7
statussuccess
started_at2026-08-11T15:26:38.809795+00:00
finished_at2026-08-11T15:26:48.391330+00:00
source_last_modified2023-06-21T07:56:39.492710+02:00
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View the complete summary.json source
{
  "code": "SASDGC7",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "Structures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats.",
    "publication": {
      "title": "Structures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats.",
      "author_list": "Sajko S, Grishkovskaya I, Kostan J, Graewert M, Setiawan K, Trübestein L, Niedermüller K, Gehin C, Sponga A, Puchinger M, Gavin AC, Leonard TA, Svergun DI, Smith TK, Morriswood B, Djinovic-Carugo K",
      "journal": "PLoS One",
      "doi": "10.1371/journal.pone.0242677",
      "pmid": "33296386",
      "published_date": "2020"
    },
    "status": "released",
    "submitted_date": "2019-10-01",
    "released_date": "2020-01-23"
  },
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    "sample": {
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        {
          "long_name": "MORN repeat-containing protein 1",
          "short_name": "pf MORN1 delta 6",
          "sequence": "GRGTYFFADGGIYEGDWVDGKMEGKGVYKYLNGNKYEG\r\nEWINDMKNGYGTLAYVNGELYEGYWKNDKVHGKGTLTY\r\nSKGDKYIGEWKYAKKCGEGELIYASGDKFKGQWKNDKAN\r\nGYGILLYNNGNKYEGEWLDDHRHGMGTFTCKEDGTIYSG\r\nHFQFNRKHGKGTLTFVNGHILQGIWNSGLLEKVINYELTPS\r\nSPWNDPDL",
          "organism": "Plasmodium falciparum",
          "uniprot_code": "Q8IJ93",
          "uniprot_range_first": 162,
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View the complete manifest.json source
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