The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.
Every source field is expanded here, including empty values, list members and fields already shown above.
View the complete summary.json source
{
"code": "SASDGG6",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "Structure and dynamics of UBA5-UFM1 complex formation showing new insights in the UBA5 activation mechanism",
"publication": {
"title": "Structure and dynamics of UBA5-UFM1 complex formation showing new insights in the UBA5 activation mechanism",
"author_list": "Fuchs S, Kikhney A, Schubert R, Kaiser C, Liebau E, Svergun D, Betzel C, Perbandt M",
"journal": "Journal of Structural Biology",
"doi": "10.1016/j.jsb.2021.107796",
"pmid": null,
"published_date": "2021 Sep"
},
"status": "released",
"submitted_date": "2021-04-11",
"released_date": "2021-07-13"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDGG6.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDGG6.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDGG6_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDGG6_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDGG6_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDGG6_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDGG6.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus 6M",
"resolution": null
},
"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Ubiquitin-like modifier-activating enzyme 5",
"short_name": "UBA5",
"sequence": "MGSSHHHHHHSSGLVPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVAANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMSMKPNPQCDDRNCRKQQEEYKKKVAALPKQ EVIQEEEEIIHEDNEWGIELV",
"organism": "Homo sapiens",
"uniprot_code": "Q9GZZ9",
"uniprot_range_first": 57,
"uniprot_range_last": 346,
"oligomerization": "dimer",
"molecular_type": "protein",
"uniprot_sequence": "MAESVERLQQRVQELERELAQERSLQVPRSGDGGGGRVRIEKMSSEVVDSNPYSRLMALK\nRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQP\nHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLS\nCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVAANID\nEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMSMKPN\nPQCDDRNCRKQQEEYKKKVAALPKQEVIQEEEEIIHEDNEWGIELVSEVSEEELKNFSGP\nVPDLPEGITVAYTIPKKQEDSVTELTVEDSGESLEDLMAKMKNM",
"mw": 34.194,
"total_mw": 68.388,
"number_molecules": 2,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "20 mM Tris, 150 mM NaCl, 2 mM DTT",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "Ubiquitin activating enzyme 5 (0.3 mg/ml)",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "Hamburg, Germany",
"full_name": "University of Hamburg",
"webpage": "https://www.uni-hamburg.de/"
}
],
"contributor_name": "Sebastian",
"contributor_surname": "Fuchs",
"orcid": ""
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2019-06-13",
"storage_temperature": 15.0,
"cell_temperature": 15.0,
"exposure_time": 0.045,
"number_of_frames": 50,
"wavelength": 0.123982,
"sample_detector_distance": 3.0,
"concentration_min": null,
"concentration_max": 0.3,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.025,
"s_max": 7.315,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDGG6_fit1_model1_img.png",
"software": "SASREF",
"pdb_link": [],
"model_title": null,
"type_of_model": "atomic",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDGG6_fit1_model1.pdb",
"model_mw": 34.16,
"bead_radius": null,
"log": null,
"symmetry": "P1",
"comment": "61.4% by volume",
"user": 484
},
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDGG6_fit1_model2_img.png",
"software": "SASREF",
"pdb_link": [],
"model_title": null,
"type_of_model": "atomic",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDGG6_fit1_model2.pdb",
"model_mw": 34.16,
"bead_radius": null,
"log": null,
"symmetry": null,
"comment": "20.8% by volume",
"user": 484
},
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDGG6_fit1_model3_img.png",
"software": "SASREF",
"pdb_link": [
{
"pdb_code": "5iaa",
"ext_code": "5IAA",
"ext_type": "pdb",
"difference_with_model": "identical"
}
],
"model_title": null,
"type_of_model": "atomic",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDGG6_fit1_model3.pdb",
"model_mw": 68.33,
"bead_radius": null,
"log": null,
"symmetry": "P2",
"comment": "17.7% by volume",
"user": 484
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDGG6_fit1_fixed_fit_img.png",
"software": "OLIGOMER",
"chi_square_value": 1.07,
"p_value": 0.578,
"fit_residual_plot": "SASDGG6_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDGG6_fit1.fit",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/final-oligomer.log",
"software_version": "3.0.2 (r12569)",
"description": ""
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 29.0,
"experimental_mw_error": null,
"guinier_i0_mw": 47.83,
"guinier_i0_mw_error": null,
"porod_mw": 44.29,
"porod_mw_error": null,
"pddf_i0": 0.002711,
"pddf_i0_error": null,
"guinier_i0": 0.0028,
"guinier_i0_error": 2.3e-05,
"pddf_rg": 2.606,
"pddf_rg_error": null,
"guinier_rg": 2.83,
"guinier_rg_error": 0.05,
"pddf_dmax": 9.0,
"pddf_dmax_error": null,
"porod_volume": 73.52,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 5,
"guinier_point_last": 141,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDGG6_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-06-21T07:55:24.740692+02:00",
"bragg_peak": []
}
View the complete manifest.json source
{
"code": "SASDGG6",
"status": "success",
"started_at": "2026-08-11T16:48:25.284070+00:00",
"finished_at": "2026-08-11T16:48:34.929681+00:00",
"source_last_modified": "2023-06-21T07:55:24.740692+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDGG6/",
"path": "/data/saxsdb/sasbdb/entries/g6/sasdgg6/source/summary.json",
"size": 8381,
"sha256": "52616124e5f6de3b9fe2ac86af1cd55bdf489ebd22e06113cd8d1259539ed1f4"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDGG6.dat",
"path": "/data/saxsdb/sasbdb/entries/g6/sasdgg6/source/SASDGG6.dat",
"size": 120229,
"sha256": "6d95a8a612e9b62bb5db1ad5dd664f3914390df1d844d5e05863598f9d95b7e1",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDGG6.out",
"path": "/data/saxsdb/sasbdb/entries/g6/sasdgg6/source/SASDGG6.out",
"size": 96903,
"sha256": "6d3cd73b6d8c99a4731af7e766bf94960a37f07be65d879461a01dc1d595b976",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDGG6.sascif",
"path": "/data/saxsdb/sasbdb/entries/g6/sasdgg6/source/SASDGG6.sascif",
"size": 207396,
"sha256": "19e923bb1a77fa6a78e1659c5c87373b5b23d442b09ea09fab7a5a2f9b6ffd0e",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDGG6.zip",
"path": "/data/saxsdb/sasbdb/entries/g6/sasdgg6/source/SASDGG6.zip",
"size": 390535,
"sha256": "bb961843a12a5cb34aab6ee57f6f1eccdfefcb52e2bfac337567b3b4a7264c48",
"role": "full_entry_zip",
"zip_member_count": 6,
"zip_validation": "central_directory_readable"
}
]
}