The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.
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{
"code": "SASDUX3",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "Visualizing the nucleating and capped states of f-actin by Ca(2+)-gelsolin: Saxs data based structures of binary and ternary complexes.",
"publication": {
"title": "Visualizing the nucleating and capped states of f-actin by Ca(2+)-gelsolin: Saxs data based structures of binary and ternary complexes.",
"author_list": "Sagar A, Peddada N, Choudhary V, Mir Y, Garg R, Ashish",
"journal": "Int J Biol Macromol",
"doi": "10.1016/j.ijbiomac.2024.134556",
"pmid": "39128762",
"published_date": "2024 Aug 9"
},
"status": "released",
"submitted_date": "2024-02-28",
"released_date": "2024-03-08"
},
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"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDUX3.dat",
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"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDUX3_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDUX3_pofr_img.png",
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"experiment": {
"instrument": {
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"name": "Pilatus 2M",
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},
"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
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"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Actin, cytoplasmic 1",
"short_name": null,
"sequence": "MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS\r\nKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT\r\nQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL\r\nAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY\r\nELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS\r\nGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ\r\nEYDESGPSIVHRKCF",
"organism": "Gallus gallus",
"uniprot_code": "P60706",
"uniprot_range_first": 1,
"uniprot_range_last": 375,
"oligomerization": "18-mer",
"molecular_type": "protein",
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"mw": 41.736,
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"number_molecules": 18,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": ""
}
],
"buffer": {
"name": "50 mM KCl, 50 mM Tris-HCl, pH 8.0, 5 mM MgCl2, 1 mM ATP, 0.1% 2-mercaptoethanol",
"concentration_unit": null,
"comment": "F-buffer",
"additive": null,
"concentration": null,
"pka": null,
"ph": 8.0,
"deuteration": null
},
"purity_method": null,
"name": "F-actin in F-buffer at an actin concentration of 2 mg/mL",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "CSIR",
"address": "Chandigarh, India",
"full_name": "CSIR-Institute of Microbial Technology",
"webpage": "http://www.imtech.res.in/"
}
],
"contributor_name": "FNU",
"contributor_surname": "Ashish",
"orcid": "https://orcid.org/0000-0002-0144-0441"
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2013-08-31",
"storage_temperature": 10.0,
"cell_temperature": 10.0,
"exposure_time": 0.05,
"number_of_frames": 20,
"wavelength": 0.155,
"sample_detector_distance": 3.1,
"concentration_min": null,
"concentration_max": 2.0,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.068,
"s_max": 4.435,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
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"comment": null,
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}
],
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"software": "CRYSOL",
"chi_square_value": 2.314,
"p_value": 0.0,
"fit_residual_plot": "SASDUX3_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDUX3_fit1.fit",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/3_fliAdod.log",
"software_version": "V. 28",
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},
{
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}
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"chi_square_value": 3.108,
"p_value": 0.0,
"fit_residual_plot": "SASDUX3_fit2_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDUX3_fit2.fit",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/2_dAlFRWM.log",
"software_version": null,
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},
{
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}
],
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"software": "CRYSOL",
"chi_square_value": 7.705,
"p_value": 0.0,
"fit_residual_plot": "SASDUX3_fit3_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDUX3_fit3.fit",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/1_rNxlXxV.log",
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}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": "CAUTION: The calculated p(r) is categorised as a SUSPICIOUS solution.",
"experiment_description": null,
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 665.0,
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"guinier_i0_mw": 700.0,
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"pddf_i0": 33350.0,
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"pddf_dmax": 48.0,
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"porod_volume": null,
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"estimated_volume": null,
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"guinier_point_first": 4,
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"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDUX3_datloglog_img.png",
"symmetry": null,
"last_modified": "2024-08-12T08:58:33.675718+02:00",
"bragg_peak": []
}
