SASDVA3

Iron-free pigeon ISCA1 under geomagnetic field

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2026-01-02T14:57:39.934355+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Iron-free pigeon ISCA1 under geomagnetic field

浓度— – 7.0 缓冲液 / pH20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol / 8.0
实验温度20.0 设备 / 束线Photon Factory (PF), High Energy Accelerator Research Organization (KEK) / BL-10C
波长0.155 nm曝光60.0 s × 1

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Pigeon iron-sulfur cluster assembly 1 homolog, mitochondrial
查看序列
GPGGGGSASSASSVVRATVRAVSKRKIQATRAALTLTPSAVQKIKELLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKSKGDSDEEVVQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNI
proteinColumba liviaP0DN752–132unknown分子数 —14.71 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1665[3]0.01907381–0.1697374 1/A含误差列缺失 00sasbdb/entries/a3/sasdva3/source/SASDVA3.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
i0Guinier0.0550094—arbitrary
mwExperimental14.71—kDa
rgGuinier3.5550.296Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol缓冲液浓度—
pH8.0添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2021-11-01储存 / 测量温度4.0 / 20.0
曝光时间60.0帧数1
波长0.155样品-探测器距离3.071
光源X-ray synchrotron探测器Pilatus3 2M
机构 / 束线Photon Factory (PF), High Energy Accelerator Research Organization (KEK) / BL-10C · Tsukuba, Japan
q 范围0.191 – 1.697样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图

可下载文件

类别文件状态大小校验值下载与查看
curvesasbdb/entries/a3/sasdva3/source/SASDVA3.datdownloaded3088749f90aba2d61d20316040c7b52b1cebf2afb9be87b4ee39cb7c952233e7635c2下载查看原文件源站
full_entry_zipsasbdb/entries/a3/sasdva3/source/SASDVA3.zipdownloaded958148cffd52468b784156046ab9f21c29512376475c47f835c41e9a8de4a8620b6f下载查看原文件源站
pddfsasbdb/entries/a3/sasdva3/source/SASDVA3.outnot_listed——下载查看原文件
sascifsasbdb/entries/a3/sasdva3/source/SASDVA3.sascifnot_available——下载查看原文件源站
summarysasbdb/entries/a3/sasdva3/source/summary.jsondownloaded56513d8d26a3c467c3dab221da6b1d805db933aa577af1178ded47db70e3b24a64f3下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(1 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:134 个字段值
字段路径原始值
codeSASDVA3
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleA hidden property of the iron-sulfur protein in the mononuclear iron-bound state: species-dependent structural ordering induced by magnetic fields.
project.publication.titleA hidden property of the iron-sulfur protein in the mononuclear iron-bound state: species-dependent structural ordering induced by magnetic fields.
project.publication.author_listArai S, Soga S, Hirai M, Kobayashi R, Masai H, Kimura K, Maeda K, Nagashima H
project.publication.journalFEBS J
project.publication.doi10.1111/febs.70377
project.publication.pmid41466526
project.publication.published_date2025 Dec 30
project.statusreleased
project.submitted_date2024-06-06
project.released_date2026-01-02
pddf_datanull
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDVA3.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVA3_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVA3_kratky_img.png
pddf_plotnull
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVA3_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDVA3.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus3 2M
experiment.instrument.detector.resolution0.172
experiment.instrument.namePhoton Factory (PF), High Energy Accelerator Research Organization (KEK)
experiment.instrument.cityTsukuba
experiment.instrument.countryJapan
experiment.instrument.beamline_nameBL-10C
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_namePigeon iron-sulfur cluster assembly 1 homolog, mitochondrial
experiment.sample.molecule[0].short_nameclISCA1
experiment.sample.molecule[0].sequenceGPGGGGSASSASSVVRATVRAVSKRKIQATRAALTLTPSAVQKIKELLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKSKGDSDEEVVQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNI
experiment.sample.molecule[0].organismColumba livia
experiment.sample.molecule[0].uniprot_codeP0DN75
experiment.sample.molecule[0].uniprot_range_first2
experiment.sample.molecule[0].uniprot_range_last132
experiment.sample.molecule[0].oligomerizationunknown
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMASSASSVVRATVRAVSKRKIQATRAALTLTPSAVQKIKELLKDKPEHVGVKVGVRTRGC NGLSYTLEYTKSKGDSDEEVVQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNI KGTCGCGESFNI
experiment.sample.molecule[0].mw14.71
experiment.sample.molecule[0].total_mw14.71
experiment.sample.molecule[0].number_molecules0
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionThe clISCA1 protein forms oligomers of various sizes.
experiment.sample.buffer.name20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph8.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameIron-free pigeon ISCA1 under geomagnetic field
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressnull
experiment.contributor[0].affiliation[0].full_nameNational Institutes for Quantum and Radiological Science and Technology
experiment.contributor[0].affiliation[0].webpagenull
experiment.contributor[0].contributor_nameShigeki
experiment.contributor[0].contributor_surnameArai
experiment.contributor[0].orcidhttps://orcid.org/0000-0002-4819-4305
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2021-11-01
experiment.storage_temperature4.0
experiment.cell_temperature20.0
experiment.exposure_time60.0
experiment.number_of_frames1
experiment.wavelength0.155
experiment.sample_detector_distance3.071
experiment.concentration_minnull
experiment.concentration_max7.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.191
experiment.s_max1.697
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[]
estimated_volume_methodnull
pddf_softwarenull
pddf_software_versionnull
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitarbitrary
experimental_mw14.71
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mwnull
porod_mw_errornull
pddf_i0null
pddf_i0_errornull
guinier_i00.0550094
guinier_i0_errornull
pddf_rgnull
pddf_rg_errornull
guinier_rg3.555
guinier_rg_error0.296
pddf_dmaxnull
pddf_dmax_errornull
porod_volumenull
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first10
guinier_point_last78
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDVA3_datloglog_img.png
symmetrynull
last_modified2026-01-02T14:57:39.934355+01:00
bragg_peak[]
manifest.json:31 个字段值
字段路径原始值
codeSASDVA3
statussuccess
started_at2026-08-11T16:42:40.526728+00:00
finished_at2026-08-11T16:42:45.954488+00:00
source_last_modified2026-01-02T14:57:39.934355+01:00
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files[2].rolepddf
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files[4].rolefull_entry_zip
files[4].zip_member_count1
files[4].zip_validationcentral_directory_readable
查看完整 summary.json 原文
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  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "A hidden property of the iron-sulfur protein in the mononuclear iron-bound state: species-dependent structural ordering induced by magnetic fields.",
    "publication": {
      "title": "A hidden property of the iron-sulfur protein in the mononuclear iron-bound state: species-dependent structural ordering induced by magnetic fields.",
      "author_list": "Arai S, Soga S, Hirai M, Kobayashi R, Masai H, Kimura K, Maeda K, Nagashima H",
      "journal": "FEBS J",
      "doi": "10.1111/febs.70377",
      "pmid": "41466526",
      "published_date": "2025 Dec 30"
    },
    "status": "released",
    "submitted_date": "2024-06-06",
    "released_date": "2026-01-02"
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  "guinier_rg_error": 0.296,
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}
查看完整 manifest.json 原文
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  "status": "success",
  "started_at": "2026-08-11T16:42:40.526728+00:00",
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