Sub-element stem-loop 5b within the SARS-CoV-2 5'ge element stem-loop 5 (5_SL5)

{
  "code": "SASDVC3",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "Dissecting the Conformational Heterogeneity of Stem-Loop Substructures of the Fifth Element in the 5'-Untranslated Region of SARS-CoV-2.",
    "publication": {
      "title": "Dissecting the Conformational Heterogeneity of Stem-Loop Substructures of the Fifth Element in the 5'-Untranslated Region of SARS-CoV-2.",
      "author_list": "Mertinkus KR, Oxenfarth A, Richter C, Wacker A, Mata CP, Carazo JM, Schlundt A, Schwalbe H",
      "journal": "J Am Chem Soc",
      "doi": "10.1021/jacs.4c08406",
      "pmid": "39442924",
      "published_date": "2024 Nov 6"
    },
    "status": "released",
    "submitted_date": "2024-07-01",
    "released_date": "2024-09-30"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDVC3.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDVC3.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVC3_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVC3_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVC3_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVC3_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVC3.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Pilatus3 2M",
        "resolution": 0.172
      },
      "name": "ESRF",
      "city": "Grenoble",
      "country": "France",
      "beamline_name": "BM29",
      "beam_geometry": "point",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "sub-element stem-loop 5b from SARS-CoV-2 5'genomic end",
          "short_name": "5_SL5b",
          "sequence": "C ACA UCU AGG UUU CGU CCG GGU GUG",
          "organism": "Severe acute respiratory syndrome coronavirus 2",
          "uniprot_code": null,
          "uniprot_range_first": null,
          "uniprot_range_last": null,
          "oligomerization": "monomer",
          "molecular_type": "RNA",
          "uniprot_sequence": "",
          "mw": 8.189,
          "total_mw": 8.189,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": ""
        }
      ],
      "buffer": {
        "name": "25 mM potassium phosphate, 50 mM KCl",
        "concentration_unit": null,
        "comment": "also used with 10 mM Mg2+ or 10 mM Mg2+/5 mM GdnCl",
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 6.2,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Sub-element stem-loop 5b within the SARS-CoV-2 5'ge element stem-loop 5 (5_SL5)",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": null,
            "full_name": "Goethe University Frankfurt, Dept. Biosciences",
            "webpage": null
          }
        ],
        "contributor_name": "Andreas",
        "contributor_surname": "Schlundt",
        "orcid": "https://orcid.org/0000-0003-2254-7560"
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2021-02-03",
    "storage_temperature": 10.0,
    "cell_temperature": 20.0,
    "exposure_time": 1.0,
    "number_of_frames": 10,
    "wavelength": 0.09919,
    "sample_detector_distance": 2.9,
    "concentration_min": null,
    "concentration_max": 2.5,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.039,
    "s_max": 5.183,
    "total_exposure_time": null,
    "seccolumn": null
  },
  "fits": [
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVC3_fit1_model1_img.png",
          "software": "PyMOL",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVC3_fit1_model1.pdb",
          "model_mw": 7.91,
          "bead_radius": null,
          "log": null,
          "symmetry": "P1",
          "comment": null,
          "user": 741
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVC3_fit1_fixed_fit_img.png",
      "software": "CRYSOL",
      "chi_square_value": 4.742,
      "p_value": 0.0,
      "fit_residual_plot": "SASDVC3_fit1_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVC3_fit1.fit",
      "fit_log": null,
      "software_version": null,
      "description": ""
    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": "5.0",
  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": null,
  "tags": [],
  "intensity_unit": "arbitrary",
  "experimental_mw": 8.0,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": null,
  "porod_mw_error": null,
  "pddf_i0": 71.69,
  "pddf_i0_error": null,
  "guinier_i0": 72.3704,
  "guinier_i0_error": null,
  "pddf_rg": 1.408,
  "pddf_rg_error": null,
  "guinier_rg": 1.41,
  "guinier_rg_error": 0.006,
  "pddf_dmax": 4.33,
  "pddf_dmax_error": null,
  "porod_volume": null,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 113,
  "guinier_point_last": 179,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDVC3_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2024-11-13T14:41:49.571235+01:00",
  "bragg_peak": []
}

{
  "code": "SASDVC3",
  "status": "success",
  "started_at": "2026-08-11T13:57:41.490209+00:00",
  "finished_at": "2026-08-11T13:57:49.912001+00:00",
  "source_last_modified": "2024-11-13T14:41:49.571235+01:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDVC3/",
      "path": "/data/saxsdb/sasbdb/entries/c3/sasdvc3/source/summary.json",
      "size": 6496,
      "sha256": "701d5f3c2b6efe0b06178209e7b5642412d75bedbc60a18c2d53ce5e2261a4ca"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDVC3.dat",
      "path": "/data/saxsdb/sasbdb/entries/c3/sasdvc3/source/SASDVC3.dat",
      "size": 75000,
      "sha256": "8a65aad3ceedfe322c027d5dd6e4e70c2bc8a8495221016b16839e3d8bfe0d3e",
      "role": "curve"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/p_of_R_files/SASDVC3.out",
      "path": "/data/saxsdb/sasbdb/entries/c3/sasdvc3/source/SASDVC3.out",
      "size": 89289,
      "sha256": "b1d36fcd1869718ae601317f1e124268a11c3afffcb56c59f579ceda332b3cbf",
      "role": "pddf"
    },
    {
      "status": "not_available",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVC3.sascif",
      "path": "/data/saxsdb/sasbdb/entries/c3/sasdvc3/source/SASDVC3.sascif",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDVC3.zip",
      "path": "/data/saxsdb/sasbdb/entries/c3/sasdvc3/source/SASDVC3.zip",
      "size": 85474,
      "sha256": "9f747ced4af8ba07c1392996256af7cf41f0f51e792f3884942ca89eb0f64ac0",
      "role": "full_entry_zip",
      "zip_member_count": 4,
      "zip_validation": "central_directory_readable"
    }
  ]
}