查看完整 summary.json 原文
{
"code": "SASDVC8",
"status": "Published",
"type_of_curve": "SEC-SAS",
"angular_unit": "1/A",
"project": {
"title": "Unraveling the molecular grammar and the structural transitions underlying the fibrillation of a viral fibrillogenic domain.",
"publication": {
"title": "Unraveling the molecular grammar and the structural transitions underlying the fibrillation of a viral fibrillogenic domain.",
"author_list": "Gondelaud F, Leval J, Arora L, Walimbe A, Bignon C, Ptchelkine D, Brocca S, Mukhopadyay S, Longhi S",
"journal": "Protein Sci",
"doi": "10.1002/pro.70068",
"pmid": "39985377",
"published_date": "2025 Mar"
},
"status": "released",
"submitted_date": "2024-10-14",
"released_date": "2025-02-24"
},
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"name": "ESRF",
"city": "Grenoble",
"country": "France",
"beamline_name": "BM29",
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{
"long_name": "Protein W",
"short_name": "PNT3",
"sequence": "MSYYHHHHHHLESTSLYKKAGFTPTEEPPVIPEYYYGSGRRGDLSKSPPRGNVNLDSIKIYTSDDEDENQLEYEDEFAKSSSEVVIDTTPEDNDSINQEEVVGDPSDQGLEHPFPLGKFPEKEETPDVRRKDS",
"organism": "Hendra virus (isolate Horse/Autralia/Hendra/1994)",
"uniprot_code": "P0C1C6",
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"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MDKLDLVNDGLDIIDFIQKNQKEIQKTYGRSSIQQPSTKDRTRAWEDFLQSTSGEHEQAE\nGGMPKNDGGTEGRNVEDLSSVTSSDGTIGQRVSNTRAWAEDPDDIQLDPMVTDVVYHDHG\nGECTGHGPSSSPERGWSYHMSGTHDGNVRAVPDTKVLPNAPKTTVPEEVREIDLIGLEDK\nFASAGLNPAAVPFVPKNQSTPTEEPPVIPEYYYGSGRRGDLSKSPPRGNVNLDSIKIYTS\nDDEDENQLEYEDEFAKSSSEVVIDTTPEDNDSINQEEVVGDPSDQGLEHPFPLGKFPEKE\nETPDVRRKDSLMQDSCKRGGVPKRLPMLSEEFECSGSDDPIIQELEREGSHPGGSLRLRE\nPPQSSGNSRNQPDRQLKTGDAASPGGVQRPGTPMPKSRIMPIKKGAQTRSLNMLGRKTCL\nGRRVVQPGMFADYPPTKKARVLLRRMSN",
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"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": "The protein construct used for SAXS contains a non-native polyhistitine tag and additional amino acids (MSYYHHHHHHLESTSLYKKAGF)."
}
],
"buffer": {
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"concentration_unit": null,
"comment": "HBS",
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"pka": null,
"ph": 7.2,
"deuteration": null
},
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"name": "Hendra virus protein P/V/W PNT3 domain",
"ext_coefficient": null,
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"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "13288 Marseille, France",
"full_name": "CNRS, AFMB UMR 7257 ",
"webpage": ""
}
],
"contributor_name": "Frank",
"contributor_surname": "Gondelaud",
"orcid": ""
}
],
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"date": "2023-06-13",
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"exposure_time": 1.0,
"number_of_frames": 600,
"wavelength": 0.099,
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"seccolumn": 37
},
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"software": "EOM/GAJOE",
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"fit_residual_plot": "SASDVC8_fit1_fitresiduals_img.png",
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}
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"experiment_description": "Synchrotron SAXS data from solutions of Hendra virus protein P/V/W PNT3 domain in 20 mM HEPES, 150 mM NaCl, pH 7.2 were collected on the BM29 beam line at the ESRF (Grenoble, France) using a Pilatus3 2M detector at a sample-detector distance of 2.8 m and at a wavelength of λ = 0.099 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 45.00 μl sample at 5 mg/ml was injected at a 0.30 ml/min flow rate onto a Agilent AdvanceBio SEC 2.7 µm - 130 Å column at 20°C. 600 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
"tags": [],
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"guinier_point_first": 1,
"guinier_point_last": 49,
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"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDVC8_datloglog_img.png",
"symmetry": null,
"last_modified": "2025-02-24T10:52:45.147375+01:00",
"bragg_peak": []
}查看完整 manifest.json 原文
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