The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.
Every source field is expanded here, including empty values, list members and fields already shown above.
View the complete summary.json source
{
"code": "SASDVK9",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "Histone modification-driven structural remodeling unleashes DNMT3B in DNA methylation.",
"publication": {
"title": "Histone modification-driven structural remodeling unleashes DNMT3B in DNA methylation.",
"author_list": "Cho CC, Huang HH, Jiang BC, Yang WZ, Chen YN, Yuan HS",
"journal": "Sci Adv",
"doi": "10.1126/sciadv.adu8116",
"pmid": "40138405",
"published_date": "2025 Mar 28"
},
"status": "released",
"submitted_date": "2024-11-09",
"released_date": "2025-01-25"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDVK9.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDVK9.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVK9_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVK9_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVK9_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVK9_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVK9.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Eiger X 1M and Eiger X 9M",
"resolution": 75.0
},
"name": "Taiwan Photon Source, NSRRC",
"city": "Hsinchu",
"country": "Taiwan",
"beamline_name": "13A",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Histone H3.3",
"short_name": "H3.3",
"sequence": ">\r\nMARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPH",
"organism": "Homo sa",
"uniprot_code": "P84243",
"uniprot_range_first": 1,
"uniprot_range_last": 40,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE\nLLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI\nMPKDIQLARRIRGERA",
"mw": 4.189,
"total_mw": 4.189,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": ""
},
{
"long_name": "DNA (cytosine-5)-methyltransferase 3B Pro-Trp-Trp-Pro (PWWP) domain",
"short_name": "DNMT3B PWWP domain",
"sequence": "EADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRKAMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQP",
"organism": "Homo sapiens",
"uniprot_code": "Q9UBC3",
"uniprot_range_first": 206,
"uniprot_range_last": 355,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MKGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREV\nSSLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPS\nPRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGT\nPQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWP\nAMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRK\nAMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPVVNKS\nKVRRAGSRKLESRKYENKTRRRTADDSATSDYCPAPKRLKTNCYNNGKDRGDEDQSREQM\nASDVANNKSSLEDGCLSCGRKNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTV\nCCEGRELLLCSNTSCCRCFCVECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRK\nDWNVRLQAFFTSDTGLEYEAPKLYPAIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGK\nYVASEVCEESIAVGTVKHEGNIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPA\nRKGLYEGTGRLFFEFYHLLNYSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVM\nIDAIKVSAAHRARYFWGNLPGMNRPVIASKNDKLELQDCLEYNRIAKLKKVQTITTKSNS\nIKQGKNQLFPVVMNGKEDVLWCTELERIFGFPVHYTDVSNMGRGARQKLLGRSWSVPVIR\nHLFAPLKDYFACE",
"mw": 16.677,
"total_mw": 16.677,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": ""
}
],
"buffer": {
"name": "20 mM Tris, 300 mM NaCl, 1 mM TCEP, 5% glycerol",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 8.0,
"deuteration": null
},
"purity_method": null,
"name": "Pro-Trp-Trp-Pro (PWWP) domain from human DNA (cytosine-5)-methyltransferase 3B (DNMT3B) in complex with histone H3",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "Taipei, Taiwan",
"full_name": "Academia Sinica",
"webpage": "https://www.sinica.edu.tw"
}
],
"contributor_name": "CHAO-CHENG",
"contributor_surname": "CHO",
"orcid": ""
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2024-09-17",
"storage_temperature": 4.0,
"cell_temperature": 10.0,
"exposure_time": 0.2,
"number_of_frames": 107,
"wavelength": 0.0827,
"sample_detector_distance": 2.507,
"concentration_min": null,
"concentration_max": 10.0,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.074,
"s_max": 11.668,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVK9_fit1_model1_img.png",
"software": "GASBOR",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDVK9_fit1_model1.cif",
"model_mw": null,
"bead_radius": null,
"log": null,
"symmetry": null,
"comment": null,
"user": 1113
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVK9_fit1_fixed_fit_img.png",
"software": "GASBOR",
"chi_square_value": 1.48,
"p_value": 0.0,
"fit_residual_plot": "SASDVK9_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVK9_fit1.fir",
"fit_log": null,
"software_version": null,
"description": ""
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": "1/cm",
"experimental_mw": 20.934,
"experimental_mw_error": null,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": 12.0,
"porod_mw_error": null,
"pddf_i0": 0.03415,
"pddf_i0_error": null,
"guinier_i0": 0.0340232,
"guinier_i0_error": null,
"pddf_rg": 1.78,
"pddf_rg_error": null,
"guinier_rg": 1.75,
"guinier_rg_error": 0.057,
"pddf_dmax": 7.35,
"pddf_dmax_error": null,
"porod_volume": 19.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 7,
"guinier_point_last": 133,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDVK9_datloglog_img.png",
"symmetry": null,
"last_modified": "2025-03-30T18:45:23.911685+02:00",
"bragg_peak": []
}View the complete manifest.json source
{
"code": "SASDVK9",
"status": "success",
"started_at": "2026-08-11T16:34:36.354531+00:00",
"finished_at": "2026-08-11T16:34:43.276762+00:00",
"source_last_modified": "2025-03-30T18:45:23.911685+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDVK9/",
"path": "/data/saxsdb/sasbdb/entries/k9/sasdvk9/source/summary.json",
"size": 8134,
"sha256": "3273a2863aab7d010f1d9317cb46e91929d929683827cd5ac55f0373bf170592"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDVK9.dat",
"path": "/data/saxsdb/sasbdb/entries/k9/sasdvk9/source/SASDVK9.dat",
"size": 23761,
"sha256": "93323c0a0fc3d8654535bf5e2da5bb59de6ed3366333783b1922bf22743273f5",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDVK9.out",
"path": "/data/saxsdb/sasbdb/entries/k9/sasdvk9/source/SASDVK9.out",
"size": 30830,
"sha256": "8695c968e2145a116209a58d8a3002efcc264b231d0ec8cc730360ba37d542c6",
"role": "pddf"
},
{
"status": "not_available",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVK9.sascif",
"path": "/data/saxsdb/sasbdb/entries/k9/sasdvk9/source/SASDVK9.sascif",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDVK9.zip",
"path": "/data/saxsdb/sasbdb/entries/k9/sasdvk9/source/SASDVK9.zip",
"size": 25904,
"sha256": "c7644c60e4f22b3dbc72cd3147205f5a366b142d35cdc4d6c03a198501c0ca6f",
"role": "full_entry_zip",
"zip_member_count": 4,
"zip_validation": "central_directory_readable"
}
]
}
