查看完整 summary.json 原文
{
"code": "SASDVP2",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases.",
"publication": {
"title": "S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases.",
"author_list": "Mishra N, Gido CD, Herdendorf TJ, Hammel M, Hura GL, Fu ZQ, Geisbrecht BV",
"journal": "J Biol Chem",
"doi": "10.1016/j.jbc.2024.107627",
"pmid": "39098536",
"published_date": "2024 Aug 3"
},
"status": "released",
"submitted_date": "2024-06-17",
"released_date": "2024-07-22"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDVP2.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDVP2.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVP2_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVP2_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVP2_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVP2_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVP2.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus3 X 2M",
"resolution": 172.0
},
"name": "Advanced Light Source (ALS)",
"city": "Berkeley, CA",
"country": "USA",
"beamline_name": "12.3.1 (SIBYLS)",
"beam_geometry": "",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Cathepsin G",
"short_name": "CG",
"sequence": "IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTTMR",
"organism": "Homo sapiens",
"uniprot_code": "P08311",
"uniprot_range_first": 22,
"uniprot_range_last": 245,
"oligomerization": "tetramer",
"molecular_type": "protein",
"uniprot_sequence": "MQPLLLLLAFLLPTGAEAGEIIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVL\nTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRR\nNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYD\nPRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRT\nTMRSFKLLDQMETPL",
"mw": 25.354,
"total_mw": 101.416,
"number_molecules": 4,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": ""
},
{
"long_name": "Neutrophil elastase",
"short_name": "NE",
"sequence": "IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ",
"organism": "Homo sapiens",
"uniprot_code": "P08246",
"uniprot_range_first": 31,
"uniprot_range_last": 249,
"oligomerization": "tetramer",
"molecular_type": "protein",
"uniprot_sequence": "MTLGRRLACLFLACVLPALLLGGTALASEIVGGRRARPHAWPFMVSLQLRGGHFCGATLI\nAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVI\nLQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSL\nCRRSNVCTLVRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVN\nWIDSIIQRSEDNPCPHPRDPDPASRTH",
"mw": 23.295,
"total_mw": 93.18,
"number_molecules": 4,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": ""
},
{
"long_name": "Eap34",
"short_name": "Eap34",
"sequence": "NYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEITVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK",
"organism": "Staphylococcus aureus (strain Mu50 / ATCC 700699)",
"uniprot_code": "Q99QS1",
"uniprot_range_first": 268,
"uniprot_range_last": 438,
"oligomerization": "dimer",
"molecular_type": "protein",
"uniprot_sequence": "MKFKSLITTTLALGVIASTGANFNTNEASAAAKPLDKSSSTLHHGHSNIQIPYTITVNGT\nSQNILSSLTFNKNQNISYKDIENKVKSVLYFNRGISDIDLRLSKQAEYTVHFKNGTKRVI\nDLKSGIYTADLINTSDIKAISVNVDTKKQPKDKAKANVQVPYTITVNGTSQNILSNLTFN\nKNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTANL\nINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLT\nSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEI\nTVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISD\nLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK",
"mw": 24.124,
"total_mw": 48.248,
"number_molecules": 2,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": ""
}
],
"buffer": {
"name": "20 mM HEPES, 140 mM NaCl",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.4,
"deuteration": null
},
"purity_method": null,
"name": "Multimeric complex cosisted of Human Cathepsin G-Neutrophil elastase tetramers bound to S.aureus Protein Map Eap3 and Eap4 domains",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": null,
"full_name": "Kansas State University",
"webpage": null
}
],
"contributor_name": "Nitin",
"contributor_surname": "Mishra",
"orcid": "https://orcid.org/0000-0001-8931-7351"
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2023-06-03",
"storage_temperature": 20.0,
"cell_temperature": 20.0,
"exposure_time": 2.0,
"number_of_frames": 848,
"wavelength": 0.1127,
"sample_detector_distance": 2.1,
"concentration_min": null,
"concentration_max": 5.0,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.109,
"s_max": 4.4,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVP2_fit1_model1_img.png",
"software": "BILBOMD",
"pdb_link": [],
"model_title": null,
"type_of_model": "atomic",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDVP2_fit1_model1.pdb",
"model_mw": 241.4,
"bead_radius": null,
"log": null,
"symmetry": null,
"comment": null,
"user": 1074
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVP2_fit1_fitfoxs_img.png",
"software": "FoXS",
"chi_square_value": 0.325665,
"p_value": 0.0,
"fit_residual_plot": "SASDVP2_fit1_fitfoxsresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVP2_fit1.dat",
"fit_log": null,
"software_version": null,
"description": ""
},
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVP2_fit2_model1_img.png",
"software": "BILBOMD",
"pdb_link": [],
"model_title": null,
"type_of_model": "atomic",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDVP2_fit2_model1.pdb",
"model_mw": 241.5,
"bead_radius": null,
"log": null,
"symmetry": null,
"comment": null,
"user": 1074
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVP2_fit2_fitfoxs_img.png",
"software": "FoXS",
"chi_square_value": 0.123939,
"p_value": 0.0,
"fit_residual_plot": "SASDVP2_fit2_fitfoxsresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVP2_fit2.dat",
"fit_log": null,
"software_version": null,
"description": ""
},
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVP2_fit3_model1_img.png",
"software": "BILBOMD",
"pdb_link": [],
"model_title": null,
"type_of_model": "atomic",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDVP2_fit3_model1.pdb",
"model_mw": 241.5,
"bead_radius": null,
"log": null,
"symmetry": null,
"comment": null,
"user": 1074
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVP2_fit3_fitfoxs_img.png",
"software": "FoXS",
"chi_square_value": 0.104778,
"p_value": 0.0,
"fit_residual_plot": "SASDVP2_fit3_fitfoxsresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVP2_fit3.dat",
"fit_log": null,
"software_version": null,
"description": ""
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 210.5,
"experimental_mw_error": null,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": 310.0,
"porod_mw_error": null,
"pddf_i0": 135.3,
"pddf_i0_error": null,
"guinier_i0": 134.1,
"guinier_i0_error": null,
"pddf_rg": 5.54,
"pddf_rg_error": null,
"guinier_rg": 5.367,
"guinier_rg_error": 0.105,
"pddf_dmax": 19.37,
"pddf_dmax_error": null,
"porod_volume": 500.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 2,
"guinier_point_last": 28,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDVP2_datloglog_img.png",
"symmetry": null,
"last_modified": "2024-10-07T14:58:23.683355+02:00",
"bragg_peak": []
}
