查看完整 summary.json 原文
{
"code": "SASDVS2",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "Plasmodium falciparum nucleoplasmin (PfNPM)",
"publication": null,
"status": "released",
"submitted_date": "2024-06-13",
"released_date": "2026-06-13"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDVS2.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDVS2.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVS2_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVS2_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVS2_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVS2_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVS2.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus3 2M",
"resolution": 0.172
},
"name": "ESRF",
"city": "Grenoble",
"country": "France",
"beamline_name": "BM29",
"beam_geometry": "point",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "N-terminal domain of Nucleoplasmin-like domain-containing protein A3",
"short_name": "PfNPM A3",
"sequence": "MFYGKVVKPDETVVPEVKDGYSVIHLSRACLNNPEHEGKIYVQVEDGNGCYNICCLQKNV\r\nCEDTPLDIFLMLDNDVKIKTSGSSNEVHIVGYYEVSFGQDNLDEDEDEFEDEFDNDEVRM\r\nLTKKNTLKNSLSNGISKRKKNLENNEDDETNVGRNDEDDDDEDDEDDEDELEHHHHHH",
"organism": "Plasmodium falciparum 3D7",
"uniprot_code": "C0H4U4",
"uniprot_range_first": 1,
"uniprot_range_last": 170,
"oligomerization": "pentamer",
"molecular_type": "protein",
"uniprot_sequence": "MFYGKVVKPDETVVPEVKDGYSVIHLSRACLNNPEHEGKIYVQVEDGNGCYNICCLQKNV\nCEDTPLDIFLMLDNDVKIKTSGSSNEVHIVGYYEVSFGQDNLDEDEDEFEDEFDNDEVRM\nLTKKNTLKNSLSNGISKRKKNLENNEDDETNVGRNDEDDDDEDDEDDEDEEEDDDEEDED\nDEEDDEDDDDEEEEDEEDEDEEGEDEDDEEDEEEEEEEDEEGEDVENKKKGGDKKKNKRS\nLDNKSDGPLKKSKIDDEGQFEKDLVAFLKKNGKSKLTELGKVKKPEGLKMKLGFFIKKHS\nNVFKFDTEGQIVSLK",
"mw": 20.511,
"total_mw": 102.555,
"number_molecules": 5,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": ""
}
],
"buffer": {
"name": "20 mM Tris, 150 mM NaCl, 2 mM β-mercaptoethanol",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "Nucleoplasmin-like domain-containing protein PfNPM (1-170)",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "India",
"full_name": "Institute of Life Sciences (ILS)",
"webpage": "https://www.ils.res.in/"
}
],
"contributor_name": "Ketul",
"contributor_surname": "Saharan",
"orcid": ""
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2022-06-28",
"storage_temperature": 4.0,
"cell_temperature": 20.0,
"exposure_time": 20.0,
"number_of_frames": 10,
"wavelength": 0.09794,
"sample_detector_distance": 2.867,
"concentration_min": null,
"concentration_max": 1.0,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.044,
"s_max": 5.205,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVS2_fit1_model1_img.png",
"software": "DAMMIF",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": "DAMAVER 5.0 (r12736)",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDVS2_fit1_model1.pdb",
"model_mw": 128.556,
"bead_radius": null,
"log": null,
"symmetry": null,
"comment": null,
"user": 757
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVS2_fit1_fixed_fit_img.png",
"software": "DAMMIF",
"chi_square_value": 1.074,
"p_value": 0.0003,
"fit_residual_plot": "SASDVS2_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVS2_fit1.fir",
"fit_log": null,
"software_version": null,
"description": ""
},
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVS2_fit2_model1_img.png",
"software": "AlphaFold",
"pdb_link": [],
"model_title": null,
"type_of_model": "atomic",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDVS2_fit2_model1.pdb",
"model_mw": 97.07,
"bead_radius": null,
"log": null,
"symmetry": "C5",
"comment": null,
"user": 757
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVS2_fit2_fixed_fit_img.png",
"software": "FoXS",
"chi_square_value": 33.572143,
"p_value": 0.0,
"fit_residual_plot": "SASDVS2_fit2_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVS2_fit2.fit",
"fit_log": null,
"software_version": null,
"description": ""
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 102.0,
"experimental_mw_error": null,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": 119.84,
"porod_mw_error": null,
"pddf_i0": 369.8,
"pddf_i0_error": null,
"guinier_i0": 366.547,
"guinier_i0_error": null,
"pddf_rg": 4.365,
"pddf_rg_error": null,
"guinier_rg": 4.24,
"guinier_rg_error": 0.01,
"pddf_dmax": 14.54,
"pddf_dmax_error": null,
"porod_volume": 203.74,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 5,
"guinier_point_last": 51,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDVS2_datloglog_img.png",
"symmetry": null,
"last_modified": "2026-06-12T19:50:20.605177+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
"code": "SASDVS2",
"status": "success",
"started_at": "2026-08-11T13:45:23.243558+00:00",
"finished_at": "2026-08-11T13:45:33.247173+00:00",
"source_last_modified": "2026-06-12T19:50:20.605177+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDVS2/",
"path": "/data/saxsdb/sasbdb/entries/s2/sasdvs2/source/summary.json",
"size": 7438,
"sha256": "a2dbe3898d629acd6348a14229d29b146f1e1958cfc71ec79a3f7c26495a7083"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDVS2.dat",
"path": "/data/saxsdb/sasbdb/entries/s2/sasdvs2/source/SASDVS2.dat",
"size": 46083,
"sha256": "20ea045f16aee0b1d9c097008bfaf6a13305bb4fc0cd3bf21dd7792e357964ff",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDVS2.out",
"path": "/data/saxsdb/sasbdb/entries/s2/sasdvs2/source/SASDVS2.out",
"size": 36343,
"sha256": "b76f3d8ed8764dc69493b1559959a068e6dd898a96ef6d5bb2c3dd9ff7bfc22f",
"role": "pddf"
},
{
"status": "not_available",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVS2.sascif",
"path": "/data/saxsdb/sasbdb/entries/s2/sasdvs2/source/SASDVS2.sascif",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDVS2.zip",
"path": "/data/saxsdb/sasbdb/entries/s2/sasdvs2/source/SASDVS2.zip",
"size": 200828,
"sha256": "4bd6474c95e212506664e7f52930377c01e31d79a09616ab26be7e59276cc221",
"role": "full_entry_zip",
"zip_member_count": 6,
"zip_validation": "central_directory_readable"
}
]
}
