SASDVS9

Mouse High mobility group protein B2 (HMGB2)-dsDNA complex 1:2

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2025-10-29T10:18:04.142763+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Mouse High mobility group protein B2 (HMGB2)-dsDNA complex 1:2

浓度— – 10.0 缓冲液 / pHTris 50mM, NaCl 150mM / 7.0
实验温度10.0 设备 / 束线Taiwan Photon Source, NSRRC / 13A
波长0.08265 nm曝光2.0 s × 148

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
High mobility group protein B2
查看序列
MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEEEEDDEEEEEDEELVPRGSLEHHHHHH
proteinMus musculusP306811–210monomer分子数 125.836 kDa
Double stranded DNA 20mer
查看序列
ACTGGACAAATACTCCGAGGTGACCTGTTTATGAGGCTCC
DNA———–—monomer分子数 112.376 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1346[3]0.00744–0.61331 1/A含误差列缺失 00sasbdb/entries/s9/sasdvs9/source/SASDVS9.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)12.95—Å
i0Guinier0.0981541—1/cm
i0P(r)0.09809—1/cm
mwExperimental37.7—kDa
mwPorod28.0—kDa
porod_volumePorod48.5—ų
rgGuinier3.3040.13Å
rgP(r)3.35—Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称Tris 50mM, NaCl 150mM缓冲液浓度—
pH7.0添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2024-04-27储存 / 测量温度4.0 / 10.0
曝光时间2.0帧数148
波长0.08265样品-探测器距离2.49137
光源X-ray synchrotron探测器Eiger X 1M and Eiger X 9M
机构 / 束线Taiwan Photon Source, NSRRC / 13A · Hsinchu, Taiwan
q 范围0.074 – 6.133样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
curvesasbdb/entries/s9/sasdvs9/source/SASDVS9.datdownloaded15947ddac048d2988f14fb8aa2b8d22ecd533a4602b99aece58a128fa9a6315715efe下载查看原文件源站
full_entry_zipsasbdb/entries/s9/sasdvs9/source/SASDVS9.zipdownloaded1132725f76635d2f3abcb38cb59fe2f8ffd6f1ea18855559401979b31c0896849b612下载查看原文件源站
pddfsasbdb/entries/s9/sasdvs9/source/SASDVS9.outdownloaded281508209c69a26a215064b1eabda259207a65dddfff24982067fd35ad4f67353f4cb下载查看原文件源站
sascifsasbdb/entries/s9/sasdvs9/source/SASDVS9.sascifnot_available——下载查看原文件源站
summarysasbdb/entries/s9/sasdvs9/source/summary.jsondownloaded5945785cb4d67387738ca0be432857f7eb74e1bd0c4456f009c8dbb380633bc17083下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(2 项)
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  "zip_member_count": 2,
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:146 个字段值
字段路径原始值
codeSASDVS9
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleHigh mobility group protein B2 (HMGB2)
project.publicationnull
project.statusreleased
project.submitted_date2024-10-30
project.released_date2025-10-30
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDVS9.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDVS9.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVS9_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVS9_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVS9_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVS9_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDVS9.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.nameEiger X 1M and Eiger X 9M
experiment.instrument.detector.resolution75.0
experiment.instrument.nameTaiwan Photon Source, NSRRC
experiment.instrument.cityHsinchu
experiment.instrument.countryTaiwan
experiment.instrument.beamline_name13A
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameHigh mobility group protein B2
experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequenceMGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEEEEDDEEEEEDEELVPRGSLEHHHHHH
experiment.sample.molecule[0].organismMus musculus
experiment.sample.molecule[0].uniprot_codeP30681
experiment.sample.molecule[0].uniprot_range_first1
experiment.sample.molecule[0].uniprot_range_last210
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF EDLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGL SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG SKKKNEPEDEEEEEEEEEEEDDEEEEEDEE
experiment.sample.molecule[0].mw25.836
experiment.sample.molecule[0].total_mw25.836
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionfull-length High mobility group protein B2 with C-terminal 6xHisTag
experiment.sample.molecule[1].long_nameDouble stranded DNA 20mer
experiment.sample.molecule[1].short_namenull
experiment.sample.molecule[1].sequenceACTGGACAAATACTCCGAGG TGACCTGTTTATGAGGCTCC
experiment.sample.molecule[1].organismnull
experiment.sample.molecule[1].uniprot_codenull
experiment.sample.molecule[1].uniprot_range_firstnull
experiment.sample.molecule[1].uniprot_range_lastnull
experiment.sample.molecule[1].oligomerizationmonomer
experiment.sample.molecule[1].molecular_typeDNA
experiment.sample.molecule[1].uniprot_sequence
experiment.sample.molecule[1].mw12.376
experiment.sample.molecule[1].total_mw12.376
experiment.sample.molecule[1].number_molecules1
experiment.sample.molecule[1].complex_stateFalse
experiment.sample.molecule[1].deuterationnull
experiment.sample.molecule[1].molecule_sourcebiological
experiment.sample.molecule[1].molecule_description
experiment.sample.buffer.nameTris 50mM, NaCl 150mM
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameMouse High mobility group protein B2 (HMGB2)-dsDNA complex 1:2
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressnull
experiment.contributor[0].affiliation[0].full_namenational yang ming chiao tung university
experiment.contributor[0].affiliation[0].webpagenull
experiment.contributor[0].contributor_nameChun I
experiment.contributor[0].contributor_surnameTu
experiment.contributor[0].orcid
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2024-04-27
experiment.storage_temperature4.0
experiment.cell_temperature10.0
experiment.exposure_time2.0
experiment.number_of_frames148
experiment.wavelength0.08265
experiment.sample_detector_distance2.49137
experiment.concentration_minnull
experiment.concentration_max10.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.074
experiment.s_max6.133
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[]
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionnull
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unit1/cm
experimental_mw37.7
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw28.0
porod_mw_errornull
pddf_i00.09809
pddf_i0_errornull
guinier_i00.0981541
guinier_i0_errornull
pddf_rg3.35
pddf_rg_errornull
guinier_rg3.304
guinier_rg_error0.13
pddf_dmax12.95
pddf_dmax_errornull
porod_volume48.5
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first1
guinier_point_last52
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDVS9_datloglog_img.png
symmetrynull
last_modified2025-10-29T10:18:04.142763+01:00
bragg_peak[]
manifest.json:34 个字段值
字段路径原始值
codeSASDVS9
statussuccess
started_at2026-08-11T16:39:01.170089+00:00
finished_at2026-08-11T16:39:08.112544+00:00
source_last_modified2025-10-29T10:18:04.142763+01:00
files[0].statusdownloaded
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files[0].path/data/saxsdb/sasbdb/entries/s9/sasdvs9/source/summary.json
files[0].size5945
files[0].sha256785cb4d67387738ca0be432857f7eb74e1bd0c4456f009c8dbb380633bc17083
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files[1].size15947
files[1].sha256ddac048d2988f14fb8aa2b8d22ecd533a4602b99aece58a128fa9a6315715efe
files[1].rolecurve
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files[2].sha2568209c69a26a215064b1eabda259207a65dddfff24982067fd35ad4f67353f4cb
files[2].rolepddf
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files[3].urlhttps://www.sasbdb.org/media/sascif/sascif_files/SASDVS9.sascif
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files[3].rolesascif
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files[4].rolefull_entry_zip
files[4].zip_member_count2
files[4].zip_validationcentral_directory_readable
查看完整 summary.json 原文
{
  "code": "SASDVS9",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "High mobility group protein B2 (HMGB2)",
    "publication": null,
    "status": "released",
    "submitted_date": "2024-10-30",
    "released_date": "2025-10-30"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDVS9.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDVS9.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVS9_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVS9_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVS9_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVS9_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVS9.sascif",
  "experiment": {
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        "resolution": 75.0
      },
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      "city": "Hsinchu",
      "country": "Taiwan",
      "beamline_name": "13A",
      "beam_geometry": null,
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
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      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
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          "long_name": "High mobility group protein B2",
          "short_name": null,
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          "organism": "Mus musculus",
          "uniprot_code": "P30681",
          "uniprot_range_first": 1,
          "uniprot_range_last": 210,
          "oligomerization": "monomer",
          "molecular_type": "protein",
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          "complex_state": false,
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        },
        {
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          "short_name": null,
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          "organism": null,
          "uniprot_code": null,
          "uniprot_range_first": null,
          "uniprot_range_last": null,
          "oligomerization": "monomer",
          "molecular_type": "DNA",
          "uniprot_sequence": "",
          "mw": 12.376,
          "total_mw": 12.376,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": ""
        }
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        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.0,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Mouse High mobility group protein B2 (HMGB2)-dsDNA complex 1:2",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
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        "affiliation": [
          {
            "short_name": null,
            "address": null,
            "full_name": "national yang ming chiao tung university",
            "webpage": null
          }
        ],
        "contributor_name": "Chun I",
        "contributor_surname": "Tu",
        "orcid": ""
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2024-04-27",
    "storage_temperature": 4.0,
    "cell_temperature": 10.0,
    "exposure_time": 2.0,
    "number_of_frames": 148,
    "wavelength": 0.08265,
    "sample_detector_distance": 2.49137,
    "concentration_min": null,
    "concentration_max": 10.0,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.074,
    "s_max": 6.133,
    "total_exposure_time": null,
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  },
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  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": null,
  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": null,
  "tags": [],
  "intensity_unit": "1/cm",
  "experimental_mw": 37.7,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": 28.0,
  "porod_mw_error": null,
  "pddf_i0": 0.09809,
  "pddf_i0_error": null,
  "guinier_i0": 0.0981541,
  "guinier_i0_error": null,
  "pddf_rg": 3.35,
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  "guinier_rg_error": 0.13,
  "pddf_dmax": 12.95,
  "pddf_dmax_error": null,
  "porod_volume": 48.5,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 1,
  "guinier_point_last": 52,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDVS9_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2025-10-29T10:18:04.142763+01:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
{
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  "started_at": "2026-08-11T16:39:01.170089+00:00",
  "finished_at": "2026-08-11T16:39:08.112544+00:00",
  "source_last_modified": "2025-10-29T10:18:04.142763+01:00",
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      "role": "sascif"
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      "url": "https://www.sasbdb.org/media/zip_directories/SASDVS9.zip",
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}