查看完整 summary.json 原文
{
"code": "SASDVZ8",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "Histone modification-driven structural remodeling unleashes DNMT3B in DNA methylation.",
"publication": {
"title": "Histone modification-driven structural remodeling unleashes DNMT3B in DNA methylation.",
"author_list": "Cho CC, Huang HH, Jiang BC, Yang WZ, Chen YN, Yuan HS",
"journal": "Sci Adv",
"doi": "10.1126/sciadv.adu8116",
"pmid": "40138405",
"published_date": "2025 Mar 28"
},
"status": "released",
"submitted_date": "2024-11-09",
"released_date": "2025-01-25"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDVZ8.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDVZ8.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVZ8_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVZ8_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVZ8_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVZ8_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVZ8.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Eiger X 1M and Eiger X 9M",
"resolution": 75.0
},
"name": "Taiwan Photon Source, NSRRC",
"city": "Hsinchu",
"country": "Taiwan",
"beamline_name": "13A",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "DNA (cytosine-5)-methyltransferase 3B Pro-Trp-Trp-Pro (PWWP) domain",
"short_name": "DNMT3B PWWP domain",
"sequence": "EADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRKAMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQP",
"organism": "Homo sapiens",
"uniprot_code": "Q9UBC3",
"uniprot_range_first": 206,
"uniprot_range_last": 355,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MKGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRRSSSRLSKREV\nSSLLSYTQDLTGDGDGEDGDGSDTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPS\nPRSTRGRQGRNHVDESPVEFPATRSLRRRATASAGTPWPSPPSSYLTIDLTDDTEDTHGT\nPQSSSTPYARLAQDSQQGGMESPQVEADSGDGDSSEYQDGKEFGIGDLVWGKIKGFSWWP\nAMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRK\nAMYHALEKARVRAGKTFPSSPGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPVVNKS\nKVRRAGSRKLESRKYENKTRRRTADDSATSDYCPAPKRLKTNCYNNGKDRGDEDQSREQM\nASDVANNKSSLEDGCLSCGRKNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTV\nCCEGRELLLCSNTSCCRCFCVECLEVLVGTGTAAEAKLQEPWSCYMCLPQRCHGVLRRRK\nDWNVRLQAFFTSDTGLEYEAPKLYPAIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGK\nYVASEVCEESIAVGTVKHEGNIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPA\nRKGLYEGTGRLFFEFYHLLNYSRPKEGDDRPFFWMFENVVAMKVGDKRDISRFLECNPVM\nIDAIKVSAAHRARYFWGNLPGMNRPVIASKNDKLELQDCLEYNRIAKLKKVQTITTKSNS\nIKQGKNQLFPVVMNGKEDVLWCTELERIFGFPVHYTDVSNMGRGARQKLLGRSWSVPVIR\nHLFAPLKDYFACE",
"mw": 16.677,
"total_mw": 16.677,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": ""
}
],
"buffer": {
"name": "20 mM Tris, 300 mM NaCl, 1 mM TCEP, 5% glycerol",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 8.0,
"deuteration": null
},
"purity_method": null,
"name": "Pro-Trp-Trp-Pro (PWWP) domain from human DNA (cytosine-5)-methyltransferase 3B (DNMT3B)",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "Taipei, Taiwan",
"full_name": "Academia Sinica",
"webpage": "https://www.sinica.edu.tw"
}
],
"contributor_name": "CHAO-CHENG",
"contributor_surname": "CHO",
"orcid": ""
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2024-04-20",
"storage_temperature": 4.0,
"cell_temperature": 10.0,
"exposure_time": 0.2,
"number_of_frames": 118,
"wavelength": 0.0827,
"sample_detector_distance": 2.491,
"concentration_min": null,
"concentration_max": 10.0,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.07,
"s_max": 3.087,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVZ8_fit1_model1_img.png",
"software": "GASBOR",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDVZ8_fit1_model1.cif",
"model_mw": null,
"bead_radius": null,
"log": null,
"symmetry": null,
"comment": null,
"user": 1113
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVZ8_fit1_fixed_fit_img.png",
"software": "GASBOR",
"chi_square_value": 1.89,
"p_value": 0.0,
"fit_residual_plot": "SASDVZ8_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVZ8_fit1.fir",
"fit_log": null,
"software_version": null,
"description": ""
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 16.73,
"experimental_mw_error": null,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": 12.0,
"porod_mw_error": null,
"pddf_i0": 0.03356,
"pddf_i0_error": null,
"guinier_i0": 0.0335455,
"guinier_i0_error": null,
"pddf_rg": 1.77,
"pddf_rg_error": null,
"guinier_rg": 1.753,
"guinier_rg_error": 0.051,
"pddf_dmax": 6.4,
"pddf_dmax_error": null,
"porod_volume": 20464.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 9,
"guinier_point_last": 133,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDVZ8_datloglog_img.png",
"symmetry": null,
"last_modified": "2025-03-30T18:45:23.514664+02:00",
"bragg_peak": []
}
查看完整 manifest.json 原文
{
"code": "SASDVZ8",
"status": "success",
"started_at": "2026-08-11T16:28:15.533854+00:00",
"finished_at": "2026-08-11T16:28:22.637628+00:00",
"source_last_modified": "2025-03-30T18:45:23.514664+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDVZ8/",
"path": "/data/saxsdb/sasbdb/entries/z8/sasdvz8/source/summary.json",
"size": 7325,
"sha256": "a7b1330e3087c2638cd01b6f547f0ed033257aac87be53e82ef0f2f9256a829e"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDVZ8.dat",
"path": "/data/saxsdb/sasbdb/entries/z8/sasdvz8/source/SASDVZ8.dat",
"size": 13283,
"sha256": "9fba48141559c44f03bb99214fda31a4757134146f36d9d83fbc349d5ffe6149",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDVZ8.out",
"path": "/data/saxsdb/sasbdb/entries/z8/sasdvz8/source/SASDVZ8.out",
"size": 29552,
"sha256": "f1c8e4070a5d593d6739d96dde75bbfe58fbc83cd57411c13ac60ebd7a3aea2f",
"role": "pddf"
},
{
"status": "not_available",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVZ8.sascif",
"path": "/data/saxsdb/sasbdb/entries/z8/sasdvz8/source/SASDVZ8.sascif",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDVZ8.zip",
"path": "/data/saxsdb/sasbdb/entries/z8/sasdvz8/source/SASDVZ8.zip",
"size": 21873,
"sha256": "34e5de41e4db1909df074c2e0b432e84a40da960ae518762ab0688a11d72d4e4",
"role": "full_entry_zip",
"zip_member_count": 4,
"zip_validation": "central_directory_readable"
}
]
}