SASDW72

Non-deuterated N-acetylglucosamine binding Protein A (H-GbpA) in 47 % D₂O, 2.5 mg/mL

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2026-02-23T16:31:10.548255+01:00

Guinier analysis and subsequent Rg, I(0) and MW parameters are inaccurate for this entry as the protein is contrast matched.

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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Non-deuterated N-acetylglucosamine binding Protein A (H-GbpA) in 47 % D₂O, 2.5 mg/mL

浓度— – 2.5 缓冲液 / pH100 mM NaCl, 20 mM Tris, 47% v/v D₂O / 8.0
实验温度25.0 设备 / 束线ILL / D11
波长0.56 nm曝光900.0 s × 1

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
GlcNAc-binding protein A
查看序列
HGYVSAVENGVAEGRVTLCKFAANGTGEKNTHCGAIQYEPQSVEGPDGFPVTGPRDGKIASAESALAAALDEQTADRWVKRPIQAGPQTFEWTFTANHVTKDWKYYITKPNWNPNQPLSRDAFDLNPFCVVEGNMVQPPKRVSHECIVPEREGYQVILAVWDVGDTAASFYNVIDVKFDGNGPVLPDWNPAGQIIPSMDLSIGDTVYTRVFDNDGENPAYRTELKIDSETLTKANQWSYALATKINQTQKQQRAGQLNGDQFVPVYGTNPIYLKEGSGLKSVEIGYQIEAPQPEYSLTVSGLAKEYEIGEQPIQLDLTLEAQGEMSAELTVYNHHQKPLASWSQAMTDGELKSITLELSEAKAGHHMLVSRIKDRDGNLQDQQTLDFMLVEPQTPPTPGDYDFVFPNGLKEYVAGTKVLASDGAIYQCKPWPYSGYCQQWTSNATQYQPGTGSHWEMAWDKR
proteinVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)Q9KLD524–485monomer分子数 151.253 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1388[3]0.001317467–0.4102343 1/A含误差列缺失 0155sasbdb/entries/72/sasdw72/source/SASDW72.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
i0Guinier0.614325—1/cm
rgGuinier24.99533.809Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称100 mM NaCl, 20 mM Tris, 47% v/v D₂O缓冲液浓度—
pH8.0添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2020-08-18储存 / 测量温度5.0 / 25.0
曝光时间900.0帧数1
波长0.56样品-探测器距离1.7
光源neutron source探测器CERCA
机构 / 束线ILL / D11 · Grenoble, France
q 范围0.013 – 4.102样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图

可下载文件

类别文件状态大小校验值下载与查看
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pddfsasbdb/entries/72/sasdw72/source/SASDW72.outnot_listed——下载查看原文件
sascifsasbdb/entries/72/sasdw72/source/SASDW72.sascifnot_available——下载查看原文件源站
summarysasbdb/entries/72/sasdw72/source/summary.jsondownloaded71246c7d970e60ca33a599c98227fd622d28a4b3410e0b4306328ffec8e3d49185af下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(1 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:134 个字段值
字段路径原始值
codeSASDW72
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleTangled Up in Fibers: How a Multidomain Lytic Polysaccharide Monooxygenase Binds Its Chitin Substrate.
project.publication.titleTangled Up in Fibers: How a Multidomain Lytic Polysaccharide Monooxygenase Binds Its Chitin Substrate.
project.publication.author_listSørensen HV, Montserrat-Canals M, Coder A, Prévost S, Krueger S, Vaaje-Kolstad G, Bjerregaard-Andersen K, Lund R, Krengel U
project.publication.journalACS Appl Mater Interfaces
project.publication.doi10.1021/acsami.5c24418
project.publication.pmid41709583
project.publication.published_date2026 Feb 18
project.statusreleased
project.submitted_date2024-11-19
project.released_date2025-02-09
pddf_datanull
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDW72.txt
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDW72_dat_img.png
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pddf_plotnull
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sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDW72.sascif
experiment.instrument.detector.type3-He gas detector
experiment.instrument.detector.nameCERCA
experiment.instrument.detector.resolution7.5
experiment.instrument.nameILL
experiment.instrument.cityGrenoble
experiment.instrument.countryFrance
experiment.instrument.beamline_nameD11
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceneutron source
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameGlcNAc-binding protein A
experiment.sample.molecule[0].short_nameH-GbpA
experiment.sample.molecule[0].sequenceHGYVSAVENGVAEGRVTLCKFAANGTGEKNTHCGAIQYEPQSVEGPDGFPVTGPRDGKIASAESALAAALDEQTADRWVKRPIQAGPQTFEWTFTANHVTKDWKYYITKPNWNPNQPLSRDAFDLNPFCVVEGNMVQPPKRVSHECIVPEREGYQVILAVWDVGDTAASFYNVIDVKFDGNGPVLPDWNPAGQIIPSMDLSIGDTVYTRVFDNDGENPAYRTELKIDSETLTKANQWSYALATKINQTQKQQRAGQLNGDQFVPVYGTNPIYLKEGSGLKSVEIGYQIEAPQPEYSLTVSGLAKEYEIGEQPIQLDLTLEAQGEMSAELTVYNHHQKPLASWSQAMTDGELKSITLELSEAKAGHHMLVSRIKDRDGNLQDQQTLDFMLVEPQTPPTPGDYDFVFPNGLKEYVAGTKVLASDGAIYQCKPWPYSGYCQQWTSNATQYQPGTGSHWEMAWDKR
experiment.sample.molecule[0].organismVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
experiment.sample.molecule[0].uniprot_codeQ9KLD5
experiment.sample.molecule[0].uniprot_range_first24
experiment.sample.molecule[0].uniprot_range_last485
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMKKQPKMTAIALILSGISGLAYGHGYVSAVENGVAEGRVTLCKFAANGTGEKNTHCGAIQ YEPQSVEGPDGFPVTGPRDGKIASAESALAAALDEQTADRWVKRPIQAGPQTFEWTFTAN HVTKDWKYYITKPNWNPNQPLSRDAFDLNPFCVVEGNMVQPPKRVSHECIVPEREGYQVI LAVWDVGDTAASFYNVIDVKFDGNGPVLPDWNPAGQIIPSMDLSIGDTVYTRVFDNDGEN PAYRTELKIDSETLTKANQWSYALATKINQTQKQQRAGQLNGDQFVPVYGTNPIYLKEGS GLKSVEIGYQIEAPQPEYSLTVSGLAKEYEIGEQPIQLDLTLEAQGEMSAELTVYNHHQK PLASWSQAMTDGELKSITLELSEAKAGHHMLVSRIKDRDGNLQDQQTLDFMLVEPQTPPT PGDYDFVFPNGLKEYVAGTKVLASDGAIYQCKPWPYSGYCQQWTSNATQYQPGTGSHWEM AWDKR
experiment.sample.molecule[0].mw51.253
experiment.sample.molecule[0].total_mw51.253
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_description
experiment.sample.buffer.name100 mM NaCl, 20 mM Tris, 47% v/v D₂O
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph8.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameNon-deuterated N-acetylglucosamine binding Protein A (H-GbpA) in 47 % D₂O, 2.5 mg/mL
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressnull
experiment.contributor[0].affiliation[0].full_nameLund University
experiment.contributor[0].affiliation[0].webpagenull
experiment.contributor[0].contributor_nameHenrik Vinther
experiment.contributor[0].contributor_surnameSørensen
experiment.contributor[0].orcidhttps://orcid.org/0000-0003-3057-5668
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2020-08-18
experiment.storage_temperature5.0
experiment.cell_temperature25.0
experiment.exposure_time900.0
experiment.number_of_frames1
experiment.wavelength0.56
experiment.sample_detector_distance1.7
experiment.concentration_minnull
experiment.concentration_max2.5
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.013
experiment.s_max4.102
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[]
estimated_volume_methodnull
pddf_softwarenull
pddf_software_versionnull
i0_calibration_standardnull
descriptionGuinier analysis and subsequent Rg, I(0) and MW parameters are inaccurate for this entry as the protein is contrast matched.
experiment_descriptionSANS data from solutions of non-deuterated N-acetylglucosamine binding Protein A (H-GbpA) in 100 mM NaCl, 20 mM Tris, 47% v/v D₂O, pH 8 were collected on the D11 beam line at the Institut Laue-Langevin (ILL; Grenoble, France). Data recorded as I(s) vs s (where s = 4πsinθ/λ, and 2θ is the scattering angle), were collected at a sample concentration of 2.5 mg/mL at 25 degrees centigrade using three instrument configurations: Set-up 1: Sample-Detector distance, 1.7 m; Collimation distance, 5.5 m; Wavelength, 0.56 nm; Frames, 1; Time per frame, 900 s. Set-up 2: Sample-Detector distance, 8.0 m; Collimation distance, 8.0 m; Wavelength, 0.56 nm; Frames, 1; Time per frame, 900 s. Set-up 3: Sample-Detector distance, 38.95 m; Collimation distance, 40.0 m; Wavelength, 0.56 nm; Frames, 1; Time per frame, 900 s.
tags[]
intensity_unit1/cm
experimental_mwnull
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mwnull
porod_mw_errornull
pddf_i0null
pddf_i0_errornull
guinier_i00.614325
guinier_i0_errornull
pddf_rgnull
pddf_rg_errornull
guinier_rg24.995
guinier_rg_error33.809
pddf_dmaxnull
pddf_dmax_errornull
porod_volumenull
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first1
guinier_point_last100
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDW72_datloglog_img.png
symmetrynull
last_modified2026-02-23T16:31:10.548255+01:00
bragg_peak[]
manifest.json:31 个字段值
字段路径原始值
codeSASDW72
statussuccess
started_at2026-08-11T16:51:23.147597+00:00
finished_at2026-08-11T16:51:28.594074+00:00
source_last_modified2026-02-23T16:31:10.548255+01:00
files[0].statusdownloaded
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查看完整 summary.json 原文
{
  "code": "SASDW72",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "Tangled Up in Fibers: How a Multidomain Lytic Polysaccharide Monooxygenase Binds Its Chitin Substrate.",
    "publication": {
      "title": "Tangled Up in Fibers: How a Multidomain Lytic Polysaccharide Monooxygenase Binds Its Chitin Substrate.",
      "author_list": "Sørensen HV, Montserrat-Canals M, Coder A, Prévost S, Krueger S, Vaaje-Kolstad G, Bjerregaard-Andersen K, Lund R, Krengel U",
      "journal": "ACS Appl Mater Interfaces",
      "doi": "10.1021/acsami.5c24418",
      "pmid": "41709583",
      "published_date": "2026 Feb 18"
    },
    "status": "released",
    "submitted_date": "2024-11-19",
    "released_date": "2025-02-09"
  },
  "pddf_data": null,
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  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDW72.sascif",
  "experiment": {
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        "type": "3-He gas detector",
        "name": "CERCA",
        "resolution": 7.5
      },
      "name": "ILL",
      "city": "Grenoble",
      "country": "France",
      "beamline_name": "D11",
      "beam_geometry": null,
      "type_of_source": "neutron source",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
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      "line_collimation_integrationwidth": null,
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    },
    "sample": {
      "molecule": [
        {
          "long_name": "GlcNAc-binding protein A",
          "short_name": "H-GbpA",
          "sequence": "HGYVSAVENGVAEGRVTLCKFAANGTGEKNTHCGAIQYEPQSVEGPDGFPVTGPRDGKIASAESALAAALDEQTADRWVKRPIQAGPQTFEWTFTANHVTKDWKYYITKPNWNPNQPLSRDAFDLNPFCVVEGNMVQPPKRVSHECIVPEREGYQVILAVWDVGDTAASFYNVIDVKFDGNGPVLPDWNPAGQIIPSMDLSIGDTVYTRVFDNDGENPAYRTELKIDSETLTKANQWSYALATKINQTQKQQRAGQLNGDQFVPVYGTNPIYLKEGSGLKSVEIGYQIEAPQPEYSLTVSGLAKEYEIGEQPIQLDLTLEAQGEMSAELTVYNHHQKPLASWSQAMTDGELKSITLELSEAKAGHHMLVSRIKDRDGNLQDQQTLDFMLVEPQTPPTPGDYDFVFPNGLKEYVAGTKVLASDGAIYQCKPWPYSGYCQQWTSNATQYQPGTGSHWEMAWDKR",
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          "uniprot_code": "Q9KLD5",
          "uniprot_range_first": 24,
          "uniprot_range_last": 485,
          "oligomerization": "monomer",
          "molecular_type": "protein",
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          "mw": 51.253,
          "total_mw": 51.253,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": ""
        }
      ],
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        "concentration_unit": null,
        "comment": null,
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        "concentration": null,
        "pka": null,
        "ph": 8.0,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Non-deuterated N-acetylglucosamine binding Protein A (H-GbpA) in 47 % D₂O, 2.5 mg/mL",
      "ext_coefficient": null,
      "contrast": null,
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      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
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            "address": null,
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            "webpage": null
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    "storage_temperature": 5.0,
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    "exposure_time": 900.0,
    "number_of_frames": 1,
    "wavelength": 0.56,
    "sample_detector_distance": 1.7,
    "concentration_min": null,
    "concentration_max": 2.5,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.013,
    "s_max": 4.102,
    "total_exposure_time": null,
    "seccolumn": null
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  "fits": [],
  "estimated_volume_method": null,
  "pddf_software": null,
  "pddf_software_version": null,
  "i0_calibration_standard": null,
  "description": "Guinier analysis and subsequent Rg, I(0) and MW parameters are inaccurate for this entry as the protein is contrast matched.",
  "experiment_description": "SANS data from solutions of non-deuterated N-acetylglucosamine binding Protein A (H-GbpA) in 100 mM NaCl, 20 mM Tris, 47% v/v D₂O, pH 8 were collected on the D11 beam line at the Institut Laue-Langevin (ILL; Grenoble, France). Data recorded as I(s) vs s (where s = 4πsinθ/λ, and 2θ is the scattering angle), were collected at a sample concentration of 2.5 mg/mL at 25 degrees centigrade using three instrument configurations: Set-up 1: Sample-Detector distance, 1.7 m; Collimation distance, 5.5 m; Wavelength, 0.56 nm; Frames, 1; Time per frame, 900 s. Set-up 2: Sample-Detector distance, 8.0 m; Collimation distance, 8.0 m; Wavelength, 0.56 nm; Frames, 1; Time per frame, 900 s. Set-up 3: Sample-Detector distance, 38.95 m; Collimation distance, 40.0 m; Wavelength, 0.56 nm; Frames, 1; Time per frame, 900 s.",
  "tags": [],
  "intensity_unit": "1/cm",
  "experimental_mw": null,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": null,
  "porod_mw_error": null,
  "pddf_i0": null,
  "pddf_i0_error": null,
  "guinier_i0": 0.614325,
  "guinier_i0_error": null,
  "pddf_rg": null,
  "pddf_rg_error": null,
  "guinier_rg": 24.995,
  "guinier_rg_error": 33.809,
  "pddf_dmax": null,
  "pddf_dmax_error": null,
  "porod_volume": null,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 1,
  "guinier_point_last": 100,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDW72_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2026-02-23T16:31:10.548255+01:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
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