查看完整 summary.json 原文
{
"code": "SASDW87",
"status": "Published",
"type_of_curve": "SEC-SAS",
"angular_unit": "1/nm",
"project": {
"title": "Programmable Protein-DNA Composite Nanostructures: from Nanostructure Construction to Protein-Induced Micro-Scale Material Self-Assembly and Functionalization.",
"publication": {
"title": "Programmable Protein-DNA Composite Nanostructures: from Nanostructure Construction to Protein-Induced Micro-Scale Material Self-Assembly and Functionalization.",
"author_list": "Zhou W, Strmšek Ž, Snoj J, Škarabot M, Jerala R",
"journal": "Small",
"doi": "10.1002/smll.202502060",
"pmid": "40442952",
"published_date": "2025 Jul"
},
"status": "released",
"submitted_date": "2025-02-06",
"released_date": "2025-08-01"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDW87.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDW87.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDW87_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDW87_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDW87_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDW87_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDW87.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus 6M",
"resolution": null
},
"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "DCV-GFP-St",
"short_name": "DGSt",
"sequence": ">DGSt\r\nMAKSGNYSYKRWVFTINNPTFEDYVHVLEFCTLDNCKFAIVGEEKGANGTPHLQGFLNLRSNARAAALEESLGGRAWLSRARGSDEDNEEYCAKESTYLRVGEPVSKGRSSSGKGEELFTGVVPILVELDGDVNGHKFSVRGEGEGDATIGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDGKYKTRAVVKFEGDTLVNRIELKGTDFKEDGNILGHKLEYNFNSHNVYITADKQKNGIKANFTVRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQTVLSKDPNEKRDHMVLHEYVNAAGITGSGGSGAHIVMVDAYKPTKGSGHHHHHHHH",
"organism": "synthetic construct",
"uniprot_code": null,
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "",
"mw": 41.266,
"total_mw": 41.266,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": "A chimeric protein consisting of DCV, GFP, and SpyTag domain. DCV is an endonuclease ssDNA binding domain originated from Muscovy duck circovirus. GFP is a green fluorescent protein."
},
{
"long_name": "NanoLuc-Sc",
"short_name": "LucSc",
"sequence": ">LucSc\r\nMVFTLEDFVGDWRQTAGYNLDQVLEQGGVSSLFQNLGVSVTPIQRIVLSGENGLKIDIHVIIPYEGLSGDQMGQIEKIFKVVYPVDDHHFKVILHYGTLVIDGVTPNMIDYFGRPYEGIAVFDGKKITVTGTLWNGNKIIDERLINPDGSLLFRVTINGVTGWRLCERILAGSGGSGDSATHIKFSKRDEDGKELAGATMELRDSSGKTISTWISDGQVKDFYLYPGKYTFVETAAPDGYEVATAITFTVNEQGQVTVNGGSGHHHHHHHH",
"organism": "synthetic construct",
"uniprot_code": null,
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "",
"mw": 29.834,
"total_mw": 29.834,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": "A chimeric protein fusing Nano luciferase and Spy-catcher."
}
],
"buffer": {
"name": "20 mM Tris, 150 mM NaCL, 3% glycerol",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "DGSt-LucSc - DCV-GFP-SpyTag and NanoLuc-SpyCatcher Conjugate via SpyCatcher-SpyTag Reaction",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "KI",
"address": "Ljubljana, Slovenia",
"full_name": "Kemijski inštitut",
"webpage": null
}
],
"contributor_name": "Jaka",
"contributor_surname": "Snoj",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2024-03-18",
"storage_temperature": 5.0,
"cell_temperature": 20.0,
"exposure_time": 1.0,
"number_of_frames": 3000,
"wavelength": 0.123985,
"sample_detector_distance": 3.0,
"concentration_min": null,
"concentration_max": 8.5,
"sample_volume": 40.0,
"flow_rate": 0.7,
"s_min": 0.104,
"s_max": 2.501,
"total_exposure_time": null,
"seccolumn": 47
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDW87_fit1_model1_img.png",
"software": "SREFLEX",
"pdb_link": [],
"model_title": null,
"type_of_model": "atomic",
"software_version": "3.2.1",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDW87_fit1_model1.pdb",
"model_mw": 71.08,
"bead_radius": null,
"log": null,
"symmetry": null,
"comment": "The model was first generated by MODELLER (10.5) and later refined with SREFLEX.",
"user": 1027
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDW87_fit1_fixed_fit_img.png",
"software": "SREFLEX",
"chi_square_value": 1.3312,
"p_value": 0.0016,
"fit_residual_plot": "SASDW87_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDW87_fit1.fit",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/report_GUWpDGA.txt",
"software_version": "3.2.1",
"description": ""
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": "Note: The experimentally determined protein mass (SEC-MALS) is overestimated due to the presence of a fluorescent protein in the sample. The light scattering laser operates at a wavelength that excites the fluorescent protein, leading to inaccurate signal measurements.",
"experiment_description": null,
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 80.1,
"experimental_mw_error": null,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": 66.0,
"porod_mw_error": null,
"pddf_i0": 11030.0,
"pddf_i0_error": null,
"guinier_i0": 10975.8,
"guinier_i0_error": null,
"pddf_rg": 3.507,
"pddf_rg_error": null,
"guinier_rg": 3.41,
"guinier_rg_error": 0.012,
"pddf_dmax": 12.5,
"pddf_dmax_error": 0.2,
"porod_volume": 105.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 1,
"guinier_point_last": 97,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDW87_datloglog_img.png",
"symmetry": null,
"last_modified": "2025-08-01T07:48:57.038230+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
"code": "SASDW87",
"status": "success",
"started_at": "2026-08-11T15:24:23.087429+00:00",
"finished_at": "2026-08-11T15:24:31.270976+00:00",
"source_last_modified": "2025-08-01T07:48:57.038230+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDW87/",
"path": "/data/saxsdb/sasbdb/entries/87/sasdw87/source/summary.json",
"size": 8246,
"sha256": "49656223b9223afd1223505ae05b9789b7b4ea38f659fd95181b52af8e21a774"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDW87.dat",
"path": "/data/saxsdb/sasbdb/entries/87/sasdw87/source/SASDW87.dat",
"size": 38476,
"sha256": "078738ac0f953d8cdb4a8cd40f85db121b1af7604ce5314de9a5d601cc848ce7",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDW87.out",
"path": "/data/saxsdb/sasbdb/entries/87/sasdw87/source/SASDW87.out",
"size": 73032,
"sha256": "057954f841478ba50dc1f4576fd3222da09d5f3dabc732f1f91dda13144119e0",
"role": "pddf"
},
{
"status": "not_available",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDW87.sascif",
"path": "/data/saxsdb/sasbdb/entries/87/sasdw87/source/SASDW87.sascif",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDW87.zip",
"path": "/data/saxsdb/sasbdb/entries/87/sasdw87/source/SASDW87.zip",
"size": 136215,
"sha256": "8ebe0b2644f838b87630b2ff7112306b7cbc9f4e38d2cf80a94862bca4c1dbce",
"role": "full_entry_zip",
"zip_member_count": 4,
"zip_validation": "central_directory_readable"
}
]
}
