SASDWF4

Outer membrane protein MIP from Legionella pneumophila (LpMIP) in complex with inhibitor NJS224

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2025-03-03T15:29:42.496429+01:00

NJS224: https://pubchem.ncbi.nlm.nih.gov/compound/169192439

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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Outer membrane protein MIP from Legionella pneumophila (LpMIP) in complex with inhibitor NJS224

浓度— – 7.0 缓冲液 / pH20 mM Tris, 150 mM NaCl / 7.5
实验温度20.0 设备 / 束线PETRA III / EMBL P12
波长0.124 nm曝光0.095 s × 24

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Outer membrane protein MIP
查看序列
ATDATSLATDKDKLSYSIGADLGKNFKNQGIDVNPEAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFNKKADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKKSS
proteinLegionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)Q5ZXE021–233dimer分子数 222.842 kDa
(2S)‐2‐{[(2S)‐1‐[(4‐ fluorophenyl)methanesulfonyl]piperidin‐2‐ yl]formamido}‐4‐methyl‐N‐[(pyridin‐3‐ yl)methyl]pentanamide
查看序列
C25H33FN4O4S
other———–—monomer分子数 10.505 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
12651[3]0.0243063–7.37124 1/nm含误差列缺失 06sasbdb/entries/f4/sasdwf4/source/SASDWF4.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)9.74—nm
i0Guinier0.232799—arbitrary
i0P(r)0.2334—arbitrary
mwExperimental40.6—kDa
mwGuinier I(0)41.91.3kDa
mwPorod38.0—kDa
porod_volumePorod61.0—nm³
rgGuinier2.930.009nm
rgP(r)2.964—nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称20 mM Tris, 150 mM NaCl缓冲液浓度—
pH7.5添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2021-11-22储存 / 测量温度20.0 / 20.0
曝光时间0.095帧数24
波长0.124样品-探测器距离3.0
光源X-ray synchrotron探测器Pilatus 6M
机构 / 束线PETRA III / EMBL P12 · DESY; Hamburg, Germany
q 范围0.024 – 7.371样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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full_entry_zipsasbdb/entries/f4/sasdwf4/source/SASDWF4.zipdownloaded467728ab1c46f0d0a7191e8f19e1871d1d7484d843e828729e65f2b3d7ed0536d9691f下载查看原文件源站
pddfsasbdb/entries/f4/sasdwf4/source/SASDWF4.outdownloaded8766337a31a2305f31dc36bae918ca1e6dae9f3296f5581a172295bf179521e6f0c7d下载查看原文件源站
sascifsasbdb/entries/f4/sasdwf4/source/SASDWF4.sascifnot_available——下载查看原文件源站
summarysasbdb/entries/f4/sasdwf4/source/summary.jsondownloaded12924e30e206ed3a2d1ff73321fc8d84b3489ec2d11d459308efa141872dfca2c4055下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(12 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:265 个字段值
字段路径原始值
codeSASDWF4
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleStructure and Dynamics of Macrophage Infectivity Potentiator Proteins from Pathogenic Bacteria and Protozoans Bound to Fluorinated Pipecolic Acid Inhibitors.
project.publication.titleStructure and Dynamics of Macrophage Infectivity Potentiator Proteins from Pathogenic Bacteria and Protozoans Bound to Fluorinated Pipecolic Acid Inhibitors.
project.publication.author_listPérez Carrillo VH, Whittaker JJ, Wiedemann C, Harder JM, Lohr T, Jamithireddy AK, Dajka M, Goretzki B, Joseph B, Guskov A, Harmer NJ, Holzgrabe U, Hellmich UA
project.publication.journalJ Med Chem
project.publication.doi10.1021/acs.jmedchem.5c00134
project.publication.pmid39976355
project.publication.published_date2025 Feb 20
project.statusreleased
project.submitted_date2025-01-08
project.released_date2025-03-03
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experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus 6M
experiment.instrument.detector.resolutionnull
experiment.instrument.namePETRA III
experiment.instrument.cityDESY; Hamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL P12
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameOuter membrane protein MIP
experiment.sample.molecule[0].short_nameLpMIP
experiment.sample.molecule[0].sequenceATDATSLATDKDKLSYSIGADLGKNFKNQGIDVNPEAMAK GMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFNKKADENKVKGEAFLTENKNKPG VVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIP GWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKKSS
experiment.sample.molecule[0].organismLegionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
experiment.sample.molecule[0].uniprot_codeQ5ZXE0
experiment.sample.molecule[0].uniprot_range_first21
experiment.sample.molecule[0].uniprot_range_last233
experiment.sample.molecule[0].oligomerizationdimer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMKMKLVTAAVMGLAMSTAMAATDATSLATDKDKLSYSIGADLGKNFKNQGIDVNPEAMAK GMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFNKKADENKVKGEAFLTENKNKPG VVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIP GWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKKSS
experiment.sample.molecule[0].mw22.842
experiment.sample.molecule[0].total_mw45.684
experiment.sample.molecule[0].number_molecules2
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_description
experiment.sample.molecule[1].long_name(2S)‐2‐{[(2S)‐1‐[(4‐ fluorophenyl)methanesulfonyl]piperidin‐2‐ yl]formamido}‐4‐methyl‐N‐[(pyridin‐3‐ yl)methyl]pentanamide
experiment.sample.molecule[1].short_nameNJS224
experiment.sample.molecule[1].sequenceC25H33FN4O4S
experiment.sample.molecule[1].organismnull
experiment.sample.molecule[1].uniprot_codenull
experiment.sample.molecule[1].uniprot_range_firstnull
experiment.sample.molecule[1].uniprot_range_lastnull
experiment.sample.molecule[1].oligomerizationmonomer
experiment.sample.molecule[1].molecular_typeother
experiment.sample.molecule[1].uniprot_sequence
experiment.sample.molecule[1].mw0.505
experiment.sample.molecule[1].total_mw0.505
experiment.sample.molecule[1].number_molecules1
experiment.sample.molecule[1].complex_stateFalse
experiment.sample.molecule[1].deuterationnull
experiment.sample.molecule[1].molecule_sourcebiological
experiment.sample.molecule[1].molecule_descriptionNJS224: https://pubchem.ncbi.nlm.nih.gov/compound/169192439
experiment.sample.buffer.name20 mM Tris, 150 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameOuter membrane protein MIP from Legionella pneumophila (LpMIP) in complex with inhibitor NJS224
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressnull
experiment.contributor[0].affiliation[0].full_nameFriedrich-Schiller-University Jena
experiment.contributor[0].affiliation[0].webpagenull
experiment.contributor[0].contributor_nameJean-Martin
experiment.contributor[0].contributor_surnameHarder
experiment.contributor[0].orcidhttps://orcid.org/0000-0002-2322-5371
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2021-11-22
experiment.storage_temperature20.0
experiment.cell_temperature20.0
experiment.exposure_time0.095
experiment.number_of_frames24
experiment.wavelength0.124
experiment.sample_detector_distance3.0
experiment.concentration_minnull
experiment.concentration_max7.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.024
experiment.s_max7.371
experiment.total_exposure_timenull
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manifest.json:34 个字段值
字段路径原始值
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查看完整 summary.json 原文
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    "title": "Structure and Dynamics of Macrophage Infectivity Potentiator Proteins from Pathogenic Bacteria and Protozoans Bound to Fluorinated Pipecolic Acid Inhibitors.",
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      "title": "Structure and Dynamics of Macrophage Infectivity Potentiator Proteins from Pathogenic Bacteria and Protozoans Bound to Fluorinated Pipecolic Acid Inhibitors.",
      "author_list": "Pérez Carrillo VH, Whittaker JJ, Wiedemann C, Harder JM, Lohr T, Jamithireddy AK, Dajka M, Goretzki B, Joseph B, Guskov A, Harmer NJ, Holzgrabe U, Hellmich UA",
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      "doi": "10.1021/acs.jmedchem.5c00134",
      "pmid": "39976355",
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查看完整 manifest.json 原文
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