SASDWG3

MBP-tagged C-terminal domain of CpoS (Candidate inclusion membrane protein)

数据类型:SASBDB 实验数据 状态:Published 曲线类型:SEC-SAS 最后更新:2025-12-08T15:21:29.356736+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · MBP-tagged C-terminal domain of CpoS (Candidate inclusion membrane protein)

浓度— – 1.0 缓冲液 / pH20 mM Tris-HCl, 50 mM NaCl, 1 mM EDTA, 2% glycerol, 1 mM DTT / 7.5
实验温度22.0 设备 / 束线Advanced Photon Source (APS), Argonne National Laboratory / BioCAT 18ID
波长0.1033 nm曝光1.0 s × 2500

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Candidate inclusion membrane protein (MBP-tagged)
查看序列
MKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELVKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNSSSNNNNNNNNNNLGENLYFQGSHMSMGGRLARARSRRVEIERQLEVVSMQIEELEEEYKALSEVYRANLEARRAVSKYCQELEEKILDLCKRHAATICSIEEDAKQEIRHQTERFKQRLQQNQNTCSQLTAELCKLRSENKALSERLQVQASRRKK
proteinChlamydia trachomatis serovar L2 (strain ATCC VR-902B / DSM 19102 / 434/Bu)A0A0H3MBY489–215tetramer分子数 458.794 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
11673[3]0.00266289976–0.413244886 1/A含误差列缺失 0283sasbdb/entries/g3/sasdwg3/source/SASDWG3.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)30.3—Å
i0Guinier0.837131—arbitrary
i0P(r)0.81720.006arbitrary
mwExperimental263.0—kDa
mwPorod390.0—kDa
porod_volumePorod625.0—ų
rgGuinier7.1480.84Å
rgP(r)7.6720.1Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称20 mM Tris-HCl, 50 mM NaCl, 1 mM EDTA, 2% glycerol, 1 mM DTT缓冲液浓度—
pH7.5添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2023-02-15储存 / 测量温度4.0 / 22.0
曝光时间1.0帧数2500
波长0.1033样品-探测器距离3.7
光源X-ray synchrotron探测器Eiger2 XE 9M
机构 / 束线Advanced Photon Source (APS), Argonne National Laboratory / BioCAT 18ID · Lemont, IL, USA
q 范围0.027 – 4.132样品体积 / 流速250.0 / 0.6

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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full_entry_zipsasbdb/entries/g3/sasdwg3/source/SASDWG3.zipdownloaded66397d4b24a6b4409b0f26da17455936a1299781e5252de5369d3c6c7d48e6e4debd9下载查看原文件源站
pddfsasbdb/entries/g3/sasdwg3/source/SASDWG3.outdownloaded14060681fcd4fd7c326a98404d72c275230cbeccf359889dae1fd174b37fda568d3797下载查看原文件源站
sascifsasbdb/entries/g3/sasdwg3/source/SASDWG3.sascifnot_available——下载查看原文件源站
summarysasbdb/entries/g3/sasdwg3/source/summary.jsondownloaded703669fc761e30fa5ff6a2255d57b7ae7cbc0ca9d83b0acfcb2077101167619d6a22下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(2 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:129 个字段值
字段路径原始值
codeSASDWG3
statusPublished
type_of_curveSEC-SAS
angular_unit1/A
project.titleTetramer formation of CpoS facilitates Inc-Inc interactions during Chlamydia trachomatis infection
project.publicationnull
project.statusreleased
project.submitted_date2024-12-04
project.released_date2025-12-04
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDWG3.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDWG3.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDWG3_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDWG3_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDWG3_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDWG3_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDWG3.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.nameEiger2 XE 9M
experiment.instrument.detector.resolution72.0
experiment.instrument.nameAdvanced Photon Source (APS), Argonne National Laboratory
experiment.instrument.cityLemont, IL
experiment.instrument.countryUSA
experiment.instrument.beamline_nameBioCAT 18ID
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameCandidate inclusion membrane protein (MBP-tagged)
experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequenceMKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELVKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNSSSNNNNNNNNNNLGENLYFQGSHMSMGGRLARARSRRVEIERQLEVVSMQIEELEEEYKALSEVYRANLEARRAVSKYCQELEEKILDLCKRHAATICSIEEDAKQEIRHQTERFKQRLQQNQNTCSQLTAELCKLRSENKALSERLQVQASRRKK
experiment.sample.molecule[0].organismChlamydia trachomatis serovar L2 (strain ATCC VR-902B / DSM 19102 / 434/Bu)
experiment.sample.molecule[0].uniprot_codeA0A0H3MBY4
experiment.sample.molecule[0].uniprot_range_first89
experiment.sample.molecule[0].uniprot_range_last215
experiment.sample.molecule[0].oligomerizationtetramer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMSCSNVNSGAPATLFAKGAAAISSRVDTMRQMCSARVGSKTCGIALIIIGLLVATAGVVI AAVGIGTPASLAAGMILVMVGSLLLGLGLARARSRRVEIERQLEVVSMQIEELEEEYKAL SEVYRANLEARRAVSKYCQELEEKILDLCKRHAATICSIEEDAKQEIRHQTERFKQRLQQ NQNTCSQLTAELCKLRSENKALSERLQVQASRRKK
experiment.sample.molecule[0].mw58.794
experiment.sample.molecule[0].total_mw235.176
experiment.sample.molecule[0].number_molecules4
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionThe CpoS C-terminal domain construct used for SAS is fused to maltose binding protein at the N-terminus, with an intervening amino acid linker (NSSSNNNNNNNNNNLGENLYFQGSHMSMGGR).
experiment.sample.buffer.name20 mM Tris-HCl, 50 mM NaCl, 1 mM EDTA, 2% glycerol, 1 mM DTT
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameMBP-tagged C-terminal domain of CpoS (Candidate inclusion membrane protein)
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressIowa, USA
experiment.contributor[0].affiliation[0].full_nameUniversity of Iowa
experiment.contributor[0].affiliation[0].webpagehttps://uiowa.edu/
experiment.contributor[0].contributor_nameZhen
experiment.contributor[0].contributor_surnameXu
experiment.contributor[0].orcidhttps://orcid.org/0000-0001-8855-0565
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2023-02-15
experiment.storage_temperature4.0
experiment.cell_temperature22.0
experiment.exposure_time1.0
experiment.number_of_frames2500
experiment.wavelength0.1033
experiment.sample_detector_distance3.7
experiment.concentration_minnull
experiment.concentration_max1.0
experiment.sample_volume250.0
experiment.flow_rate0.6
experiment.s_min0.027
experiment.s_max4.132
experiment.total_exposure_timenull
experiment.seccolumn7
fits[]
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionnull
i0_calibration_standardnull
descriptionnull
experiment_descriptionSynchrotron SAXS data from solutions of MBP-tagged CpoS C-ter in 20 mM Tris-HCl pH 7.5, 50 mM NaCl, 1mM EDTA, 2% glycerol and 1 mM DTT were collected on the BioCAT 18-ID-D beamline at the Advanced Photon Source (APS), Argonne National Laboratory storage ring (Lemont, IL, USA) using a Eiger2 XE 9M detector at a sample-detector distance of ~3.7 m and at a wavelength of λ = 0.1033 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC)-SAXS was employed. The SEC parameters were as follows: A 250 μl sample at 1 mg/ml was injected at a 0.60 ml/min flow rate onto a Superose 6 Increase GL 10/300 column (GE healthcare) at 22°C. 2500 successive frames (0.3 second exposure time per second period) were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; An average of 30 frames before and after the eluted peaks were used for buffer subtraction. Protein peaks were also ran through evolving factor analysis (EFA) to deconvolute into the individual scattering components.
tags[]
intensity_unitarbitrary
experimental_mw263.0
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw390.0
porod_mw_errornull
pddf_i00.8172
pddf_i0_error0.006
guinier_i00.837131
guinier_i0_errornull
pddf_rg7.672
pddf_rg_error0.1
guinier_rg7.148
guinier_rg_error0.84
pddf_dmax30.3
pddf_dmax_errornull
porod_volume625.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first1
guinier_point_last126
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDWG3_datloglog_img.png
symmetrynull
last_modified2025-12-08T15:21:29.356736+01:00
bragg_peak[]
manifest.json:34 个字段值
字段路径原始值
codeSASDWG3
statussuccess
started_at2026-08-11T14:00:20.939106+00:00
finished_at2026-08-11T14:00:29.035711+00:00
source_last_modified2025-12-08T15:21:29.356736+01:00
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查看完整 summary.json 原文
{
  "code": "SASDWG3",
  "status": "Published",
  "type_of_curve": "SEC-SAS",
  "angular_unit": "1/A",
  "project": {
    "title": "Tetramer formation of CpoS facilitates Inc-Inc interactions during Chlamydia trachomatis infection",
    "publication": null,
    "status": "released",
    "submitted_date": "2024-12-04",
    "released_date": "2025-12-04"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDWG3.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDWG3.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDWG3_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDWG3_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDWG3_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDWG3_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDWG3.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Eiger2 XE 9M",
        "resolution": 72.0
      },
      "name": "Advanced Photon Source (APS), Argonne National Laboratory",
      "city": "Lemont, IL",
      "country": "USA",
      "beamline_name": "BioCAT 18ID",
      "beam_geometry": null,
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Candidate inclusion membrane protein (MBP-tagged)",
          "short_name": null,
          "sequence": "MKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELVKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNSSSNNNNNNNNNNLGENLYFQGSHMSMGGRLARARSRRVEIERQLEVVSMQIEELEEEYKALSEVYRANLEARRAVSKYCQELEEKILDLCKRHAATICSIEEDAKQEIRHQTERFKQRLQQNQNTCSQLTAELCKLRSENKALSERLQVQASRRKK",
          "organism": "Chlamydia trachomatis serovar L2 (strain ATCC VR-902B / DSM 19102 / 434/Bu)",
          "uniprot_code": "A0A0H3MBY4",
          "uniprot_range_first": 89,
          "uniprot_range_last": 215,
          "oligomerization": "tetramer",
          "molecular_type": "protein",
          "uniprot_sequence": "MSCSNVNSGAPATLFAKGAAAISSRVDTMRQMCSARVGSKTCGIALIIIGLLVATAGVVI\nAAVGIGTPASLAAGMILVMVGSLLLGLGLARARSRRVEIERQLEVVSMQIEELEEEYKAL\nSEVYRANLEARRAVSKYCQELEEKILDLCKRHAATICSIEEDAKQEIRHQTERFKQRLQQ\nNQNTCSQLTAELCKLRSENKALSERLQVQASRRKK",
          "mw": 58.794,
          "total_mw": 235.176,
          "number_molecules": 4,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": "The CpoS C-terminal domain construct used for SAS is fused to maltose binding protein at the N-terminus, with an intervening amino acid linker (NSSSNNNNNNNNNNLGENLYFQGSHMSMGGR)."
        }
      ],
      "buffer": {
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        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.5,
        "deuteration": null
      },
      "purity_method": null,
      "name": "MBP-tagged C-terminal domain of CpoS (Candidate inclusion membrane protein)",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": "Iowa, USA",
            "full_name": "University of Iowa",
            "webpage": "https://uiowa.edu/"
          }
        ],
        "contributor_name": "Zhen",
        "contributor_surname": "Xu",
        "orcid": "https://orcid.org/0000-0001-8855-0565"
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2023-02-15",
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    "wavelength": 0.1033,
    "sample_detector_distance": 3.7,
    "concentration_min": null,
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    "s_max": 4.132,
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  "pddf_software": "ATSAS GNOM",
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  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": "Synchrotron SAXS data from solutions of MBP-tagged CpoS C-ter in 20 mM Tris-HCl pH 7.5, 50 mM NaCl, 1mM EDTA, 2% glycerol and 1 mM DTT were collected on the BioCAT 18-ID-D beamline at the Advanced Photon Source (APS), Argonne National Laboratory storage ring (Lemont, IL, USA) using a Eiger2 XE 9M detector at a sample-detector distance of ~3.7 m and at a wavelength of λ = 0.1033 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC)-SAXS was employed. The SEC parameters were as follows: A 250 μl sample at 1 mg/ml was injected at a 0.60 ml/min flow rate onto a Superose 6 Increase GL 10/300 column (GE healthcare) at 22°C. 2500 successive frames (0.3 second exposure time per second period) were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; An average of 30 frames before and after the eluted peaks were used for buffer subtraction. Protein peaks were also ran through evolving factor analysis (EFA) to deconvolute into the individual scattering components.",
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  "guinier_i0_mw_error": null,
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  "pddf_i0_error": 0.006,
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  "guinier_rg_error": 0.84,
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  "porod_volume": 625.0,
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  "estimated_volume_error": null,
  "guinier_point_first": 1,
  "guinier_point_last": 126,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDWG3_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2025-12-08T15:21:29.356736+01:00",
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}
查看完整 manifest.json 原文
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