SASDWM5

A-RNA, non-edited 20mer dsRNA

数据类型:SASBDB 实验数据 状态:Published 曲线类型:SEC-SAS 最后更新:2025-06-27T13:31:58.660758+02:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · A-RNA, non-edited 20mer dsRNA

浓度— – 2.0 缓冲液 / pH25 mM sodium phosphate 25 mM sodium chloride / 6.4
实验温度20.0 设备 / 束线ESRF / BM29
波长0.09919 nm曝光2.0 s × 500

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
A-RNA, Top-Strand
查看序列
ACUGGACAAAUACUCCGAGG
RNA———–—monomer分子数 16.493 kDa
A-RNA, Bottom-Strand
查看序列
CCUCGGAGUAUUUGUCCAGU
RNA———–—monomer分子数 16.401 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1994[3]0.08207738–5.155531 1/nm含误差列缺失 012sasbdb/entries/m5/sasdwm5/source/SASDWM5.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)6.24—nm
i0Guinier13.1555—arbitrary
i0P(r)13.26—arbitrary
mwExperimental12.866—kDa
mwPorod10.0—kDa
porod_volumePorod17.0—nm³
rgGuinier1.8330.009nm
rgP(r)1.887—nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称25 mM sodium phosphate 25 mM sodium chloride缓冲液浓度—
pH6.4添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2022-11-09储存 / 测量温度4.0 / 20.0
曝光时间2.0帧数500
波长0.09919样品-探测器距离—
光源X-ray synchrotron探测器Pilatus3 2M
机构 / 束线ESRF / BM29 · Grenoble, France
q 范围0.082 – 5.156样品体积 / 流速80.0 / 0.2

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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full_entry_zipsasbdb/entries/m5/sasdwm5/source/SASDWM5.zipdownloaded28888a7f1c8d877448d7a2333ed8069e514703e692be435c0d8b3681ac7fad1043d0a下载查看原文件源站
pddfsasbdb/entries/m5/sasdwm5/source/SASDWM5.outdownloaded5581288aea2cc0bba3ff17deda71148fe66dbbbdadcc6ca91784a94c60b8cdbab3c6a下载查看原文件源站
sascifsasbdb/entries/m5/sasdwm5/source/SASDWM5.sascifnot_available——下载查看原文件源站
summarysasbdb/entries/m5/sasdwm5/source/summary.jsondownloaded5793e7bc3d753c59139517db1f1e7821f8071de8aa0b48a94615c3f4830b10af2ac9下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(2 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:151 个字段值
字段路径原始值
codeSASDWM5
statusPublished
type_of_curveSEC-SAS
angular_unit1/nm
project.titleUnique conformational dynamics and protein recognition of A-to-I hyper-edited dsRNA.
project.publication.titleUnique conformational dynamics and protein recognition of A-to-I hyper-edited dsRNA.
project.publication.author_listMüller-Hermes C, Piomponi V, Hilber S, Asami S, Kreutz C, Bussi G, Sattler M
project.publication.journalNucleic Acids Res
project.publication.doi10.1093/nar/gkaf550
project.publication.pmid40568935
project.publication.published_date2025 Jun 20
project.statusreleased
project.submitted_date2025-01-22
project.released_date2025-06-27
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intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDWM5.dat
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experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus3 2M
experiment.instrument.detector.resolution0.172
experiment.instrument.nameESRF
experiment.instrument.cityGrenoble
experiment.instrument.countryFrance
experiment.instrument.beamline_nameBM29
experiment.instrument.beam_geometrypoint
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameA-RNA, Top-Strand
experiment.sample.molecule[0].short_nameA-RNA, TS
experiment.sample.molecule[0].sequenceACU GGA CAA AUA CUC CGA GG
experiment.sample.molecule[0].organismnull
experiment.sample.molecule[0].uniprot_codenull
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeRNA
experiment.sample.molecule[0].uniprot_sequence
experiment.sample.molecule[0].mw6.493
experiment.sample.molecule[0].total_mw6.493
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_description
experiment.sample.molecule[1].long_nameA-RNA, Bottom-Strand
experiment.sample.molecule[1].short_nameA-RNA, BS
experiment.sample.molecule[1].sequenceCCU CGG AGU AUU UGU CCA GU
experiment.sample.molecule[1].organismnull
experiment.sample.molecule[1].uniprot_codenull
experiment.sample.molecule[1].uniprot_range_firstnull
experiment.sample.molecule[1].uniprot_range_lastnull
experiment.sample.molecule[1].oligomerizationmonomer
experiment.sample.molecule[1].molecular_typeRNA
experiment.sample.molecule[1].uniprot_sequence
experiment.sample.molecule[1].mw6.401
experiment.sample.molecule[1].total_mw6.401
experiment.sample.molecule[1].number_molecules1
experiment.sample.molecule[1].complex_stateFalse
experiment.sample.molecule[1].deuterationnull
experiment.sample.molecule[1].molecule_sourcebiological
experiment.sample.molecule[1].molecule_description
experiment.sample.buffer.name25 mM sodium phosphate 25 mM sodium chloride
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph6.4
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameA-RNA, non-edited 20mer dsRNA
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressMunich, Germany
experiment.contributor[0].affiliation[0].full_nameTechnical University Munich
experiment.contributor[0].affiliation[0].webpagehttps://www.tum.de
experiment.contributor[0].contributor_nameChristoph
experiment.contributor[0].contributor_surnameMueller-Hermes
experiment.contributor[0].orcid
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2022-11-09
experiment.storage_temperature4.0
experiment.cell_temperature20.0
experiment.exposure_time2.0
experiment.number_of_frames500
experiment.wavelength0.09919
experiment.sample_detector_distancenull
experiment.concentration_minnull
experiment.concentration_max2.0
experiment.sample_volume80.0
experiment.flow_rate0.2
experiment.s_min0.082
experiment.s_max5.156
experiment.total_exposure_timenull
experiment.seccolumn2
fits[]
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitarbitrary
experimental_mw12.866
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw10.0
porod_mw_errornull
pddf_i013.26
pddf_i0_errornull
guinier_i013.1555
guinier_i0_errornull
pddf_rg1.887
pddf_rg_errornull
guinier_rg1.833
guinier_rg_error0.009
pddf_dmax6.24
pddf_dmax_errornull
porod_volume17.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first36
guinier_point_last100
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDWM5_datloglog_img.png
symmetrynull
last_modified2025-06-27T13:31:58.660758+02:00
bragg_peak[]
manifest.json:34 个字段值
字段路径原始值
codeSASDWM5
statussuccess
started_at2026-08-11T14:51:24.067034+00:00
finished_at2026-08-11T14:51:31.774916+00:00
source_last_modified2025-06-27T13:31:58.660758+02:00
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查看完整 summary.json 原文
{
  "code": "SASDWM5",
  "status": "Published",
  "type_of_curve": "SEC-SAS",
  "angular_unit": "1/nm",
  "project": {
    "title": "Unique conformational dynamics and protein recognition of A-to-I hyper-edited dsRNA.",
    "publication": {
      "title": "Unique conformational dynamics and protein recognition of A-to-I hyper-edited dsRNA.",
      "author_list": "Müller-Hermes C, Piomponi V, Hilber S, Asami S, Kreutz C, Bussi G, Sattler M",
      "journal": "Nucleic Acids Res",
      "doi": "10.1093/nar/gkaf550",
      "pmid": "40568935",
      "published_date": "2025 Jun 20"
    },
    "status": "released",
    "submitted_date": "2025-01-22",
    "released_date": "2025-06-27"
  },
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  "pddf_i0_error": null,
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  "guinier_rg_error": 0.009,
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  "last_modified": "2025-06-27T13:31:58.660758+02:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
{
  "code": "SASDWM5",
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